RLG00000027196
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019340
Physical Location & Seq
Forward (+)
9464878 .. 9471270
6393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027196

Sequence Viewer

Length: 1224 bp
ATGAGTGGTGGACTTCACAACAACCCAAAGTGGCTCCCGGTTAATGACCCAGAGAGTACTAGAATTGAAGGGGGAGCTATATTGCAGTCTTTCAGCTTGAAGATCTTCTGCTATAATGAACTGAAAAAAGCCACCAGGAACTTCCGTTTTAAAAATATTGTGGGTTTTGGTGATTCTAATACAGTCTACAAGGGATGTATTGATGAGCATTCACTCAAGGTCACCAAGCCTGGTACCAGCATAGACATTGCCATAAAGATGCCTAGCAGAAGAGAGAGGTTCCGGCTGCAGGATCACCAGGACTTGTTGACAGAATTTAACCGCCTTGGACAGCTTATTCATCCAAATCTTGTAAAAATGATTGGCTACTGTCTAGAGGATAACAAAGGGCTCCTGGTGTACGAATTTATGCCTAGAGGCAGCTTGGGAGTACATCTACATTCAAGGGATCCTCAATCACAACTGCTTTCATGGAACCTTCGCATGAAGATTGCGCTTAGTGCTGCTAAGGGTCTAGCATTTCTTCACGGTGACAAGGCAAAAATGATATACGGGGACTTCAAACCTTCTAATATTCTTCTTGATTCAGTATCCAAAATCTATGGTTATGGCTTGGTAGAGGATGATGAGCTTGAAGGTTATAGAAGGCTTAGAGGCCATGACACTGAATGCTTTCTGGATTCATCGTACGCAGCTCCCGAGTATCTTACGGACACACAGAGAGGAGAATATGAGTATAGATTTGAAAGCAGCGATGATGATGAAATGGATGACTTTGTTCACTTGAGTCCCAAAAGTGATGTCTACAGTTTTGGGATTGTTCTGCTAGAAATGATATCCGGTAGACAACCTCTTGACAATACGAAGCCAATGAAAGAACGCAAGTTAGTGCAATGGGCGAAGCCTTACCTTGCCAGTAGAAGAAAAGTTCTCAAAATCATTGATGATCGTATTGAAGGCCAGTACTCCAAAGGTGGAGTTATTAGAGCAGCTAAGCTTGTAGCTCAATGCTTATCAATAGATCCCAAGGGAAGGCCAAACATGAATGATGTGGTAAAAGCATTGGAGCAGCTTCAGGAATCCAGTGACATGGAGGGCTTGGGAATTTGTGAAGATGAACCTTCCTGCAGAAATCACAGGAGGAAGTATCAATCAGAAAGGCAATGCAATAACTGCTTCTCATTCCAGGCAATCTGTTTGCGGCAGCCATGCATAAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

46.58

Weight (kDa)

8.18

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 49 - 355 1.1e-30 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 51 - 353 4.4e-27 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019340)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0368701
rosa_laevigata RLG00000027196
rosa_multiflora Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa Rorug01G0343800
rosa_samantha Rh1AG351300 Rh1BG315000
rosa_wichuraiana Rw0G021690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 3 cut(s) 186, 804, 844
AciI CCGC 2 cut(s) 322, 1201
AclWI GGATC 4 cut(s) 300, 443, 456, 1016
AcsI RAATTY 3 cut(s) 314, 404, 1104
AcuI CTGAAG 1 cut(s) 1058
AfaI GTAC 6 cut(s) 58, 235, 401, 432, 689, 965
AfiI CCNNNNNNNGG 2 cut(s) 289, 1032
AgsI TTSAA 7 cut(s) 68, 100, 444, 562, 635, 746, 956
AjnI CCWGG 5 cut(s) 134, 229, 297, 393, 1185
AlwI GGATC 4 cut(s) 300, 443, 456, 1016
Ama87I CYCGRG 1 cut(s) 698
AoxI GGCC 3 cut(s) 655, 958, 1034
ApeKI GCWGC 8 cut(s) 286, 420, 503, 692, 750, 989, 1069, 1204
ApoI RAATTY 3 cut(s) 314, 404, 1104
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
Asp700I GAANNNNTTC 2 cut(s) 104, 672
Asp718I GGTACC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 496
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 4 cut(s) 182, 214, 287, 542
AvaI CYCGRG 1 cut(s) 698
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 393
BbvI GCAGC 8 cut(s) 273, 432, 490, 704, 762, 1001, 1081, 1216
BciT130I CCWGG 5 cut(s) 136, 231, 299, 395, 1187
BciVI GTATCC 1 cut(s) 601
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 6 cut(s) 60, 264, 374, 414, 515, 827
BfmI CTRYAG 3 cut(s) 287, 805, 1126
BfuI GTATCC 1 cut(s) 601
BglII AGATCT 1 cut(s) 102
BisI GCNGC 9 cut(s) 287, 421, 504, 693, 751, 990, 1070, 1202, 1205
BlpI GCTNAGC 1 cut(s) 993
BlsI GCNGC 9 cut(s) 288, 422, 505, 694, 752, 991, 1071, 1203, 1206
BmcAI AGTACT 2 cut(s) 58, 965
Bme1390I CCNGG 6 cut(s) 38, 136, 231, 299, 395, 1187
BmeT110I CYCGRG 1 cut(s) 698
BmiI GGNNCC 6 cut(s) 35, 235, 281, 392, 450, 476
BmrFI CCNGG 6 cut(s) 38, 136, 231, 299, 395, 1187
BmsI GCATC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 200, 805
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 325, 1026
BsaWI WCCGGW 1 cut(s) 839
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 1032
Bse1I ACTGG 3 cut(s) 915, 961, 1083
Bse3DI GCAATG 3 cut(s) 246, 899, 1169
BseBI CCWGG 5 cut(s) 136, 231, 299, 395, 1187
BseDI CCNNGG 2 cut(s) 325, 1026
BseGI GGATG 4 cut(s) 200, 340, 628, 775
BseLI CCNNNNNNNGG 2 cut(s) 289, 1032
BseMI GCAATG 3 cut(s) 246, 899, 1169
BseNI ACTGG 3 cut(s) 915, 961, 1083
BseRI GAGGAG 1 cut(s) 738
BseXI GCAGC 8 cut(s) 273, 432, 490, 704, 762, 1001, 1081, 1216
BshFI GGCC 3 cut(s) 657, 960, 1036
BshNI GGYRCC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 3 cut(s) 38, 283, 840
BsiWI CGTACG 1 cut(s) 687
BslFI GGGAC 2 cut(s) 569, 774
BslI CCNNNNNNNGG 2 cut(s) 289, 1032
BsmFI GGGAC 2 cut(s) 569, 774
BsmI GAATGC 2 cut(s) 208, 674
BsnI GGCC 3 cut(s) 657, 960, 1036
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 5 cut(s) 102, 292, 448, 946, 1021
Bsp1720I GCTNAGC 1 cut(s) 993
BspACI CCGC 2 cut(s) 322, 1201
BspANI GGCC 3 cut(s) 657, 960, 1036
BspLI GGNNCC 6 cut(s) 35, 235, 281, 392, 450, 476
BspMAI CTGCAG 2 cut(s) 291, 1130
BspPI GGATC 4 cut(s) 300, 443, 456, 1016
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 3 cut(s) 246, 899, 1169
BsrI ACTGG 3 cut(s) 915, 961, 1083
BssECI CCNNGG 2 cut(s) 325, 1026
BssMI GATC 5 cut(s) 102, 292, 448, 946, 1021
BssT1I CCWWGG 2 cut(s) 325, 1026
Bst2UI CCWGG 5 cut(s) 136, 231, 299, 395, 1187
Bst4CI ACNGT 4 cut(s) 184, 371, 530, 809
Bst6I CTCTTC 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 1173
BstDEI CTNAG 4 cut(s) 497, 507, 650, 993
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 4 cut(s) 200, 340, 628, 775
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 5 cut(s) 105, 295, 451, 949, 1024
BstMBI GATC 5 cut(s) 102, 292, 448, 946, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 500, 1173
BstNI CCWGG 5 cut(s) 136, 231, 299, 395, 1187
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 6 cut(s) 36, 134, 229, 297, 393, 1185
BstSFI CTRYAG 3 cut(s) 287, 805, 1126
BstV1I GCAGC 8 cut(s) 273, 432, 490, 704, 762, 1001, 1081, 1216
BstX2I RGATCY 3 cut(s) 102, 448, 1021
BstXI CCANNNNNNTGG 1 cut(s) 1090
BstYI RGATCY 3 cut(s) 102, 448, 1021
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 3 cut(s) 657, 960, 1036
BtgZI GCGATG 1 cut(s) 768
BtsCI GGATG 4 cut(s) 200, 340, 628, 775
BtsIMutI CAGTG 2 cut(s) 663, 1090
CfoI GCGC 1 cut(s) 496
Csp6I GTAC 6 cut(s) 57, 234, 400, 431, 688, 964
CviAII CATG 6 cut(s) 471, 484, 659, 1042, 1090, 1209
CviQI GTAC 6 cut(s) 57, 234, 400, 431, 688, 964
DdeI CTNAG 4 cut(s) 497, 507, 650, 993
DpnI GATC 5 cut(s) 104, 294, 450, 948, 1023
DpnII GATC 5 cut(s) 102, 292, 448, 946, 1021
DraI TTTAAA 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 325, 1026
Eco24I GRGCYC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 837
Eco57I CTGAAG 1 cut(s) 1058
Eco88I CYCGRG 1 cut(s) 698
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 5 cut(s) 134, 229, 297, 393, 1185
EcoRV GATATC 1 cut(s) 837
EcoT14I CCWWGG 2 cut(s) 325, 1026
EcoT22I ATGCAT 1 cut(s) 1214
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 2 cut(s) 325, 1026
FaeI CATG 6 cut(s) 474, 487, 662, 1045, 1093, 1212
FaqI GGGAC 2 cut(s) 569, 774
FatI CATG 6 cut(s) 470, 483, 658, 1041, 1089, 1208
FblI GTMKAC 3 cut(s) 186, 804, 844
Fnu4HI GCNGC 9 cut(s) 287, 421, 504, 693, 751, 990, 1070, 1202, 1205
FokI GGATG 4 cut(s) 207, 327, 635, 782
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 9 cut(s) 287, 421, 504, 693, 751, 990, 1070, 1202, 1205
FspBI CTAG 6 cut(s) 60, 264, 374, 414, 515, 827
GlaI GCGC 1 cut(s) 495
GluI GCNGC 9 cut(s) 287, 421, 504, 693, 751, 990, 1070, 1202, 1205
HaeIII GGCC 3 cut(s) 657, 960, 1036
HapII CCGG 3 cut(s) 38, 283, 840
HhaI GCGC 1 cut(s) 496
Hin1II CATG 6 cut(s) 474, 487, 662, 1045, 1093, 1212
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 5 cut(s) 173, 584, 680, 787, 1079
HpaII CCGG 3 cut(s) 38, 283, 840
HphI GGTGA 4 cut(s) 182, 214, 287, 542
Hpy166II GTNNAC 7 cut(s) 11, 187, 309, 400, 781, 805, 845
Hpy188I TCNGA 1 cut(s) 1156
Hpy188III TCNNGA 6 cut(s) 374, 581, 677, 698, 854, 1076
Hpy8I GTNNAC 7 cut(s) 11, 187, 309, 400, 781, 805, 845
HpyAV CCTTC 8 cut(s) 62, 488, 576, 629, 639, 950, 1026, 1131
HpyCH4III ACNGT 4 cut(s) 184, 371, 530, 809
HpyCH4V TGCA 6 cut(s) 85, 289, 892, 1128, 1167, 1212
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 1173
HpyF3I CTNAG 4 cut(s) 497, 507, 650, 993
Hsp92II CATG 6 cut(s) 474, 487, 662, 1045, 1093, 1212
HspAI GCGC 1 cut(s) 494
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 5 cut(s) 102, 292, 448, 946, 1021
LmnI GCTCC 5 cut(s) 39, 74, 396, 700, 1066
Lsp1109I GCAGC 8 cut(s) 273, 432, 490, 704, 762, 1001, 1081, 1216
LweI GCATC 1 cut(s) 249
MaeI CTAG 6 cut(s) 60, 264, 374, 414, 515, 827
MaeIII GTNAC 3 cut(s) 220, 530, 1085
MalI GATC 5 cut(s) 104, 294, 450, 948, 1023
MboI GATC 5 cut(s) 102, 292, 448, 946, 1021
MboII GAAGA 8 cut(s) 97, 112, 282, 499, 515, 569, 933, 1124
MflI RGATCY 3 cut(s) 102, 448, 1021
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 4 cut(s) 63, 314, 404, 1104
MlyI GAGTC 1 cut(s) 796
Mph1103I ATGCAT 1 cut(s) 1214
MroXI GAANNNNTTC 2 cut(s) 104, 672
MseI TTAA 3 cut(s) 42, 150, 318
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 3 cut(s) 38, 283, 840
MspR9I CCNGG 6 cut(s) 38, 136, 231, 299, 395, 1187
Mva1269I GAATGC 2 cut(s) 208, 674
MvaI CCWGG 5 cut(s) 136, 231, 299, 395, 1187
MwoI GCNNNNNNNGC 2 cut(s) 500, 1173
NciI CCSGG 1 cut(s) 38
NdeII GATC 5 cut(s) 102, 292, 448, 946, 1021
NlaIII CATG 6 cut(s) 474, 487, 662, 1045, 1093, 1212
NlaIV GGNNCC 6 cut(s) 35, 235, 281, 392, 450, 476
NmuCI GTSAC 3 cut(s) 220, 530, 1085
NsiI ATGCAT 1 cut(s) 1214
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PctI GAATGC 2 cut(s) 208, 674
PdmI GAANNNNTTC 2 cut(s) 104, 672
PfeI GAWTC 4 cut(s) 173, 584, 680, 1079
Pfl23II CGTACG 1 cut(s) 687
PkrI GCNGC 9 cut(s) 288, 422, 505, 694, 752, 991, 1071, 1203, 1206
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
Psp6I CCWGG 5 cut(s) 134, 229, 297, 393, 1185
PspEI GGTNACC 1 cut(s) 220
PspGI CCWGG 5 cut(s) 134, 229, 297, 393, 1185
PspLI CGTACG 1 cut(s) 687
PspN4I GGNNCC 6 cut(s) 35, 235, 281, 392, 450, 476
PstI CTGCAG 2 cut(s) 291, 1130
PsuI RGATCY 3 cut(s) 102, 448, 1021
RsaI GTAC 6 cut(s) 58, 235, 401, 432, 689, 965
RsaNI GTAC 6 cut(s) 57, 234, 400, 431, 688, 964
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 42, 150, 318
SatI GCNGC 9 cut(s) 287, 421, 504, 693, 751, 990, 1070, 1202, 1205
Sau3AI GATC 5 cut(s) 102, 292, 448, 946, 1021
ScaI AGTACT 2 cut(s) 58, 965
SchI GAGTC 1 cut(s) 796
ScrFI CCNGG 6 cut(s) 38, 136, 231, 299, 395, 1187
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 3 cut(s) 287, 805, 1126
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 215, 784
SmoI CTYRAG 2 cut(s) 215, 784
Sse9I AATT 4 cut(s) 63, 314, 404, 1104
SsiI CCGC 2 cut(s) 322, 1201
SspI AATATT 2 cut(s) 157, 574
SspMI CTAG 6 cut(s) 60, 264, 374, 414, 515, 827
StyD4I CCNGG 6 cut(s) 36, 134, 229, 297, 393, 1185
StyI CCWWGG 2 cut(s) 325, 1026
TaaI ACNGT 4 cut(s) 184, 371, 530, 809
TasI AATT 4 cut(s) 63, 314, 404, 1104
TatI WGTACW 3 cut(s) 56, 430, 963
TauI GCSGC 1 cut(s) 1204
TfiI GAWTC 4 cut(s) 173, 584, 680, 1079
Tru1I TTAA 3 cut(s) 42, 150, 318
Tru9I TTAA 3 cut(s) 42, 150, 318
TscAI CASTG 2 cut(s) 670, 1090
TseFI GTSAC 3 cut(s) 220, 530, 1085
TseI GCWGC 8 cut(s) 286, 420, 503, 692, 750, 989, 1069, 1204
Tsp45I GTSAC 3 cut(s) 220, 530, 1085
TspDTI ATGAA 9 cut(s) 132, 329, 459, 500, 672, 777, 887, 1058, 1131
TspGWI ACGGA 2 cut(s) 134, 725
TspRI CASTG 2 cut(s) 670, 1090
XapI RAATTY 3 cut(s) 314, 404, 1104
XbaI TCTAGA 1 cut(s) 373
XmiI GTMKAC 3 cut(s) 186, 804, 844
XmnI GAANNNNTTC 2 cut(s) 104, 672
XspI CTAG 6 cut(s) 60, 264, 374, 414, 515, 827
ZrmI AGTACT 2 cut(s) 58, 965
Zsp2I ATGCAT 1 cut(s) 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.