Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01004

Orthogroup ID

OG0019340

Physical Location & Seq

Genomic Coordinates Forward (+)

24615 .. 25218

Gene Structure 604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATTGGCTACTGTCTAGAGGATAACAATGGGCTCCTGGTGTATGAATTTATGCCTCGAGGCAGCTTGGGAGTACATCTACATTCAAGGGATCCTCAATCACAACCGCTTTCATGGAACCTTCGCATGAAGATTGCGCTTAGTGCTGCTAAGGGTCTAGCATTTCTTCACGGTGACAAGGCAAAAATGATATACGGGGACTTCAAACCTTCTAATATTCTTCTTGATTCAAACTATGAAGCCAAAATCTATGGTTATGGCTTGGTAGAGGATGATGAGCTTGAAGGTTATAGAAGGCTTAGAGGCCATGACACTGATGCTCTCTGGATTCATCGTACGCAACTCCCGAGTATCTTACGGACACACACAGAGGAGAATATGAGTACAGATTTGAAAGCAGCGATGATGATGAAATGG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.95

Weight (kDa)

6.28

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 102	6.8e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 90	1.6e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019340)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368701
rosa_laevigata	RLG00000027196
rosa_multiflora	Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa	Rorug01G0343800
rosa_samantha	Rh1AG351300 Rh1BG315000
rosa_wichuraiana	Rw0G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	57
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	3 cut(s)	75, 337, 385
AgsI	TTSAA	5 cut(s)	87, 205, 231, 284, 394
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	66, 280
AluI	AGCT	2 cut(s)	66, 280
AlwI	GGATC	2 cut(s)	86, 99
Ama87I	CYCGRG	2 cut(s)	57, 346
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	3 cut(s)	63, 146, 398
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	2 cut(s)	57, 346
BamHI	GGATCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	75, 133, 410
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	2 cut(s)	17, 158
BisI	GCNGC	3 cut(s)	64, 147, 399
BlsI	GCNGC	3 cut(s)	65, 148, 400
Bme1390I	CCNGG	1 cut(s)	38
BmeT110I	CYCGRG	2 cut(s)	57, 346
BmiI	GGNNCC	3 cut(s)	35, 93, 119
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	75, 133, 410
BshFI	GGCC	1 cut(s)	306
BsiHKCI	CYCGRG	2 cut(s)	57, 346
BsiWI	CGTACG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	306
BsoBI	CYCGRG	2 cut(s)	57, 346
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	35, 93, 119
BspPI	GGATC	2 cut(s)	86, 99
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	14, 173
BstDEI	CTNAG	3 cut(s)	140, 150, 299
BstF5I	GGATG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	75, 133, 410
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	312
CfoI	GCGC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	74, 336, 384
CviAII	CATG	3 cut(s)	114, 127, 308
CviJI	RGCY	8 cut(s)	9, 34, 66, 242, 261, 280, 298, 306
CviKI_1	RGCY	8 cut(s)	9, 34, 66, 242, 261, 280, 298, 306
CviQI	GTAC	3 cut(s)	74, 336, 384
DdeI	CTNAG	3 cut(s)	140, 150, 299
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	36
Eco88I	CYCGRG	2 cut(s)	57, 346
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	3 cut(s)	117, 130, 311
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	113, 126, 307
Fnu4HI	GCNGC	3 cut(s)	64, 147, 399
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	3 cut(s)	64, 147, 399
FspBI	CTAG	2 cut(s)	17, 158
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	64, 147, 399
HaeIII	GGCC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	117, 130, 311
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	2 cut(s)	227, 328
HphI	GGTGA	1 cut(s)	185
Hpy188III	TCNNGA	4 cut(s)	17, 224, 325, 346
HpyAV	CCTTC	4 cut(s)	131, 219, 278, 288
HpyCH4III	ACNGT	2 cut(s)	14, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	140, 150, 299
Hsp92II	CATG	3 cut(s)	117, 130, 311
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	3 cut(s)	23, 50, 310
Lsp1109I	GCAGC	3 cut(s)	75, 133, 410
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	17, 158
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	142, 158, 212
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	47
MnlI	CCTC	7 cut(s)	13, 53, 66, 105, 262, 296, 364
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	117, 130, 311
NlaIV	GGNNCC	3 cut(s)	35, 93, 119
NmuCI	GTSAC	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	227, 328
Pfl23II	CGTACG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	65, 148, 400
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspLI	CGTACG	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	35, 93, 119
PspXI	VCTCGAGB	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	3 cut(s)	75, 337, 385
RsaNI	GTAC	3 cut(s)	74, 336, 384
SatI	GCNGC	3 cut(s)	64, 147, 399
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	5 cut(s)	68, 123, 211, 282, 289
SfaNI	GCATC	1 cut(s)	307
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	107
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	17, 158
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	14, 173
TaqI	TCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	47
TatI	WGTACW	2 cut(s)	73, 383
TfiI	GAWTC	2 cut(s)	227, 328
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	63, 146, 398
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	5 cut(s)	60, 102, 143, 252, 320
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	2 cut(s)	17, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.