Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019340

Physical Location & Seq

Genomic Coordinates Reverse (-)

58781406 .. 58783376

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACCCAGAAAGTACTAGAATTGAAGGGGGAGCTATTGCAGTTTTTCAGCTTGAAGATCTTCTGCTATAATGAACTGAAAAAGGCCACCAGGAACTTCCGTTTTAAAAATATTGTGGGTTTTGGAGATTCTAATACAGTCTACAAGGGATGTATTGATGAGCATTCACTCAAGGCCACCAAGCCTGGTACCGGCATAGACATCGCCATAAAGATGCCTAGCAGAAAAGAGAGGTTCCGGCTGCAGGATCACCAGGACTTGTTGGTGACAGAATTTAACCGCCTTGGACAGCTTATTCATCCAAATCTTGTAAAAATGATTGGCTACTGTCTAGAGGATAACAATGGGCTCCTGGTGTATGAATTTATGCCTCGAGGCAGCTTGGGAGTACATCTACATTCAAGGGATCCTCAATCACAACTGCTTTCATGGAACCTTCGCATGAAGATTGCGCTTAGTGCTGCTAAGGGTCTAGCATTTCTTCACGGTGACAAGGCAAAAATGATATACGGGGACTTCAAACCTTCTAATATTCTTCTTGATTCAAACTATGAAGCCAAAATCTATGGTTATGGCTTGGTAGAGGATGATGAGCTTGAAGGTTATAGAAGGCTTAGAGGCCATGACACTGAATGCTCTCTGGATTCATCGTACGCAGCTCCCGAGTATCTTACGGACACACACAGAGGAGAATATGAGTACAGATTTGAAAGCAGCGATGATGATGAAATGGGTATTTTTTCCCACCACAAGCTCACTTTTACTCTCTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.65

Weight (kDa)

6.37

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	34 - 227	5.9e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	36 - 229	1.5e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019340)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368701
rosa_laevigata	RLG00000027196
rosa_multiflora	Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa	Rorug01G0343800
rosa_samantha	Rh1AG351300 Rh1BG315000
rosa_wichuraiana	Rw0G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	372
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	3 cut(s)	255, 401, 414
AcsI	RAATTY	2 cut(s)	272, 362
AfaI	GTAC	5 cut(s)	15, 190, 390, 653, 701
AfiI	CCNNNNNNNGG	2 cut(s)	191, 244
AgsI	TTSAA	7 cut(s)	25, 55, 402, 520, 546, 599, 710
AjnI	CCWGG	4 cut(s)	89, 184, 252, 351
AluBI	AGCT	7 cut(s)	34, 51, 292, 381, 595, 659, 754
AluI	AGCT	7 cut(s)	34, 51, 292, 381, 595, 659, 754
AlwI	GGATC	3 cut(s)	255, 401, 414
Ama87I	CYCGRG	2 cut(s)	372, 662
AoxI	GGCC	3 cut(s)	84, 174, 619
ApeKI	GCWGC	5 cut(s)	241, 378, 461, 656, 714
ApoI	RAATTY	2 cut(s)	272, 362
Asp700I	GAANNNNTTC	1 cut(s)	59
Asp718I	GGTACC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	242, 277, 500
AvaI	CYCGRG	2 cut(s)	372, 662
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	351
BbvI	GCAGC	5 cut(s)	228, 390, 448, 668, 726
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	4 cut(s)	91, 186, 254, 353
BfaI	CTAG	4 cut(s)	17, 219, 332, 473
BfmI	CTRYAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	5 cut(s)	242, 379, 462, 657, 715
BlsI	GCNGC	5 cut(s)	243, 380, 463, 658, 716
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	4 cut(s)	91, 186, 254, 353
BmeT110I	CYCGRG	2 cut(s)	372, 662
BmiI	GGNNCC	5 cut(s)	190, 236, 350, 408, 434
BmrFI	CCNGG	4 cut(s)	91, 186, 254, 353
BmsI	GCATC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 244
Bse118I	RCCGGY	1 cut(s)	191
BseBI	CCWGG	4 cut(s)	91, 186, 254, 353
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	3 cut(s)	155, 298, 592
BseLI	CCNNNNNNNGG	2 cut(s)	191, 244
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	5 cut(s)	228, 390, 448, 668, 726
BshFI	GGCC	3 cut(s)	86, 176, 621
BshNI	GGYRCC	1 cut(s)	188
BsiHKCI	CYCGRG	2 cut(s)	372, 662
BsiSI	CCGG	2 cut(s)	192, 238
BsiWI	CGTACG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	191, 244
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	2 cut(s)	163, 638
BsnI	GGCC	3 cut(s)	86, 176, 621
BsoBI	CYCGRG	2 cut(s)	372, 662
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	57, 247, 406
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	3 cut(s)	86, 176, 621
BspLI	GGNNCC	5 cut(s)	190, 236, 350, 408, 434
BspMAI	CTGCAG	1 cut(s)	246
BspPI	GGATC	3 cut(s)	255, 401, 414
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	57, 247, 406
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	4 cut(s)	91, 186, 254, 353
Bst4CI	ACNGT	3 cut(s)	139, 329, 488
BstDEI	CTNAG	3 cut(s)	455, 465, 614
BstF5I	GGATG	3 cut(s)	155, 298, 592
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	3 cut(s)	60, 250, 409
BstMBI	GATC	3 cut(s)	57, 247, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	4 cut(s)	91, 186, 254, 353
BstSCI	CCNGG	4 cut(s)	89, 184, 252, 351
BstSFI	CTRYAG	1 cut(s)	242
BstV1I	GCAGC	5 cut(s)	228, 390, 448, 668, 726
BstX2I	RGATCY	2 cut(s)	57, 406
BstYI	RGATCY	2 cut(s)	57, 406
BsuRI	GGCC	3 cut(s)	86, 176, 621
BtgZI	GCGATG	2 cut(s)	187, 732
BtsCI	GGATG	3 cut(s)	155, 298, 592
BtsIMutI	CAGTG	1 cut(s)	627
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	191
Csp6I	GTAC	5 cut(s)	14, 189, 389, 652, 700
CviAII	CATG	3 cut(s)	429, 442, 623
CviQI	GTAC	5 cut(s)	14, 189, 389, 652, 700
DdeI	CTNAG	3 cut(s)	455, 465, 614
DpnI	GATC	3 cut(s)	59, 249, 408
DpnII	GATC	3 cut(s)	57, 247, 406
DraI	TTTAAA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	351
Eco88I	CYCGRG	2 cut(s)	372, 662
EcoRII	CCWGG	4 cut(s)	89, 184, 252, 351
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	432, 445, 626
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	3 cut(s)	428, 441, 622
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	242, 379, 462, 657, 715
FokI	GGATG	3 cut(s)	162, 285, 599
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	5 cut(s)	242, 379, 462, 657, 715
FspBI	CTAG	4 cut(s)	17, 219, 332, 473
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	5 cut(s)	242, 379, 462, 657, 715
HaeIII	GGCC	3 cut(s)	86, 176, 621
HapII	CCGG	2 cut(s)	192, 238
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	432, 445, 626
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	3 cut(s)	128, 542, 644
HpaII	CCGG	2 cut(s)	192, 238
HphI	GGTGA	3 cut(s)	242, 277, 500
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	332, 539, 641, 662
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	19, 446, 534, 593, 603
HpyCH4III	ACNGT	3 cut(s)	139, 329, 488
HpyCH4V	TGCA	2 cut(s)	40, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	455, 465, 614
Hsp92II	CATG	3 cut(s)	432, 445, 626
HspAI	GCGC	1 cut(s)	452
KpnI	GGTACC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	57, 247, 406
LmnI	GCTCC	3 cut(s)	31, 354, 664
Lsp1109I	GCAGC	5 cut(s)	228, 390, 448, 668, 726
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	4 cut(s)	17, 219, 332, 473
MaeIII	GTNAC	2 cut(s)	265, 488
MalI	GATC	3 cut(s)	59, 249, 408
MboI	GATC	3 cut(s)	57, 247, 406
MboII	GAAGA	5 cut(s)	52, 67, 457, 473, 527
MflI	RGATCY	2 cut(s)	57, 406
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	3 cut(s)	20, 272, 362
MnlI	CCTC	8 cut(s)	225, 328, 368, 381, 420, 577, 611, 680
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	2 cut(s)	105, 276
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	2 cut(s)	192, 238
MspR9I	CCNGG	4 cut(s)	91, 186, 254, 353
Mva1269I	GAATGC	2 cut(s)	163, 638
MvaI	CCWGG	4 cut(s)	91, 186, 254, 353
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	3 cut(s)	57, 247, 406
NlaIII	CATG	3 cut(s)	432, 445, 626
NlaIV	GGNNCC	5 cut(s)	190, 236, 350, 408, 434
NmuCI	GTSAC	2 cut(s)	265, 488
PaeR7I	CTCGAG	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	2 cut(s)	163, 638
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	128, 542, 644
Pfl23II	CGTACG	1 cut(s)	651
PkrI	GCNGC	5 cut(s)	243, 380, 463, 658, 716
Psp6I	CCWGG	4 cut(s)	89, 184, 252, 351
PspGI	CCWGG	4 cut(s)	89, 184, 252, 351
PspLI	CGTACG	1 cut(s)	651
PspN4I	GGNNCC	5 cut(s)	190, 236, 350, 408, 434
PspXI	VCTCGAGB	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	2 cut(s)	57, 406
RsaI	GTAC	5 cut(s)	15, 190, 390, 653, 701
RsaNI	GTAC	5 cut(s)	14, 189, 389, 652, 700
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	105, 276
SatI	GCNGC	5 cut(s)	242, 379, 462, 657, 715
Sau3AI	GATC	3 cut(s)	57, 247, 406
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	4 cut(s)	91, 186, 254, 353
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	242
Sfr274I	CTCGAG	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	170, 372
SmoI	CTYRAG	2 cut(s)	170, 372
Sse9I	AATT	3 cut(s)	20, 272, 362
SsiI	CCGC	1 cut(s)	280
SspI	AATATT	2 cut(s)	112, 532
SspMI	CTAG	4 cut(s)	17, 219, 332, 473
StyD4I	CCNGG	4 cut(s)	89, 184, 252, 351
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	139, 329, 488
TaqI	TCGA	1 cut(s)	373
TasI	AATT	3 cut(s)	20, 272, 362
TatI	WGTACW	3 cut(s)	13, 388, 699
TfiI	GAWTC	3 cut(s)	128, 542, 644
Tru1I	TTAA	2 cut(s)	105, 276
Tru9I	TTAA	2 cut(s)	105, 276
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	265, 488
TseI	GCWGC	5 cut(s)	241, 378, 461, 656, 714
Tsp45I	GTSAC	2 cut(s)	265, 488
TspDTI	ATGAA	8 cut(s)	87, 287, 375, 417, 458, 567, 636, 741
TspGWI	ACGGA	2 cut(s)	89, 689
TspRI	CASTG	1 cut(s)	634
XapI	RAATTY	2 cut(s)	272, 362
XbaI	TCTAGA	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	4 cut(s)	17, 219, 332, 473
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.