Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0019340

Physical Location & Seq

Genomic Coordinates Reverse (-)

44878499 .. 44880531

Gene Structure 2033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG315000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCTAGCAGAAAAGAGAGGTTCCGGCTGCAGGATCACCAGGACTTGTTGGTGAGAGAATTTAACCGCCTTGGACAGCTTATTCATCCAAATCTTGTAAAAATGATTGGCTACTCTCTAGAGGATAACAAAGGGCTCCTGGTGTACGAATTTATGCCTCGAGGCAGCTTGGGAGTACATCTACATTCAAGGGATCCTCAATCACAACCGCTTTCATGGAACCTTCGCATGAAGATTGCACTTAGTGCTGCTAAGGGTCTAGCATTTCTTCACGGTGACAAGGCAAAAATGATATACGGGGACTTCAAACCTTCTAATATTCTTCTTGATTCAAACTATGAAGCCAAAATCTATGGTTATGGCTTGGTAGAGGATGATGAGCTTGAAGGTTATAGAAGGCTTAGAGGCCATGACACTGAATGCTCTCTGGATTCATCGTACGCAGCTCCTGAGTATCTTACGGACACACACAGAGGAGAGTATGAGTATAGATTTGAAAGCAGCGATGATGATGAAATGGGTGTCTTTTTCTCACCACAAACTCACTTTTACTCTCTCTGTGTGAGGCATAACTACACACAAGAACTCAAGGATTTGTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

23.47

Weight (kDa)

5.7

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 156	2.5e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	12 - 158	3.9e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019340)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368701
rosa_laevigata	RLG00000027196
rosa_multiflora	Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa	Rorug01G0343800
rosa_samantha	Rh1AG351300 Rh1BG315000
rosa_wichuraiana	Rw0G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	159
AciI	CCGC	2 cut(s)	67, 209
AclWI	GGATC	3 cut(s)	42, 188, 201
AcsI	RAATTY	2 cut(s)	59, 149
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	4 cut(s)	146, 177, 440, 599
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	5 cut(s)	189, 307, 333, 386, 497
AjnI	CCWGG	2 cut(s)	39, 138
AluBI	AGCT	4 cut(s)	79, 168, 382, 446
AluI	AGCT	4 cut(s)	79, 168, 382, 446
AlwI	GGATC	3 cut(s)	42, 188, 201
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	5 cut(s)	28, 165, 248, 443, 501
ApoI	RAATTY	2 cut(s)	59, 149
AsuHPI	GGTGA	4 cut(s)	29, 64, 287, 525
AvaI	CYCGRG	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	5 cut(s)	15, 177, 235, 455, 513
BciT130I	CCWGG	2 cut(s)	41, 140
BfaI	CTAG	3 cut(s)	6, 119, 260
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	5 cut(s)	29, 166, 249, 444, 502
BlsI	GCNGC	5 cut(s)	30, 167, 250, 445, 503
Bme1390I	CCNGG	2 cut(s)	41, 140
BmeT110I	CYCGRG	1 cut(s)	159
BmiI	GGNNCC	4 cut(s)	23, 137, 195, 221
BmrFI	CCNGG	2 cut(s)	41, 140
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	41, 140
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	85, 379
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	5 cut(s)	15, 177, 235, 455, 513
BshFI	GGCC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	25
BsiWI	CGTACG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	34, 193
BspACI	CCGC	2 cut(s)	67, 209
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	23, 137, 195, 221
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	42, 188, 201
BsrGI	TGTACA	1 cut(s)	597
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	34, 193
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	41, 140
Bst4CI	ACNGT	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	597
BstDEI	CTNAG	4 cut(s)	242, 252, 401, 450
BstF5I	GGATG	2 cut(s)	85, 379
BstKTI	GATC	2 cut(s)	37, 196
BstMBI	GATC	2 cut(s)	34, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	41, 140
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	39, 138
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	5 cut(s)	15, 177, 235, 455, 513
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	85, 379
BtsIMutI	CAGTG	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	449
Csp6I	GTAC	4 cut(s)	145, 176, 439, 598
CviAII	CATG	4 cut(s)	216, 229, 410, 601
CviQI	GTAC	4 cut(s)	145, 176, 439, 598
DdeI	CTNAG	4 cut(s)	242, 252, 401, 450
DpnI	GATC	2 cut(s)	36, 195
DpnII	GATC	2 cut(s)	34, 193
DraIII	CACNNNGTG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	39, 138
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	4 cut(s)	219, 232, 413, 604
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	4 cut(s)	215, 228, 409, 600
Fnu4HI	GCNGC	5 cut(s)	29, 166, 249, 444, 502
FokI	GGATG	2 cut(s)	72, 386
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	5 cut(s)	29, 166, 249, 444, 502
FspBI	CTAG	3 cut(s)	6, 119, 260
GluI	GCNGC	5 cut(s)	29, 166, 249, 444, 502
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	4 cut(s)	219, 232, 413, 604
HinfI	GANTC	2 cut(s)	329, 431
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	4 cut(s)	29, 64, 287, 525
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	119, 326, 428, 449
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	4 cut(s)	233, 321, 380, 390
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	31, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	4 cut(s)	242, 252, 401, 450
Hsp92II	CATG	4 cut(s)	219, 232, 413, 604
Kzo9I	GATC	2 cut(s)	34, 193
LmnI	GCTCC	2 cut(s)	141, 451
LpnPI	CCDG	8 cut(s)	17, 26, 38, 53, 125, 152, 413, 462
Lsp1109I	GCAGC	5 cut(s)	15, 177, 235, 455, 513
MaeI	CTAG	3 cut(s)	6, 119, 260
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	36, 195
MboI	GATC	2 cut(s)	34, 193
MboII	GAAGA	3 cut(s)	244, 260, 314
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	59, 149
MnlI	CCTC	9 cut(s)	12, 115, 155, 168, 207, 364, 398, 467, 558
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	41, 140
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	2 cut(s)	41, 140
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	34, 193
NlaIII	CATG	4 cut(s)	219, 232, 413, 604
NlaIV	GGNNCC	4 cut(s)	23, 137, 195, 221
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	604
PaeR7I	CTCGAG	1 cut(s)	159
PciI	ACATGT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	329, 431
Pfl23II	CGTACG	1 cut(s)	438
PkrI	GCNGC	5 cut(s)	30, 167, 250, 445, 503
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	39, 138
PspGI	CCWGG	2 cut(s)	39, 138
PspLI	CGTACG	1 cut(s)	438
PspN4I	GGNNCC	4 cut(s)	23, 137, 195, 221
PspXI	VCTCGAGB	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	4 cut(s)	146, 177, 440, 599
RsaNI	GTAC	4 cut(s)	145, 176, 439, 598
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	5 cut(s)	29, 166, 249, 444, 502
Sau3AI	GATC	2 cut(s)	34, 193
ScrFI	CCNGG	2 cut(s)	41, 140
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	23, 81, 170, 225, 313, 384, 391, 448
SfcI	CTRYAG	1 cut(s)	29
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	159, 587
SmoI	CTYRAG	2 cut(s)	159, 587
Sse9I	AATT	2 cut(s)	59, 149
SsiI	CCGC	2 cut(s)	67, 209
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	3 cut(s)	6, 119, 260
StyD4I	CCNGG	2 cut(s)	39, 138
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	59, 149
TatI	WGTACW	2 cut(s)	175, 597
TfiI	GAWTC	2 cut(s)	329, 431
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	5 cut(s)	28, 165, 248, 443, 501
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	6 cut(s)	74, 204, 245, 354, 423, 528
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	2 cut(s)	59, 149
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	3 cut(s)	6, 119, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.