Rorug01G0343800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
46193225 .. 46194406
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0343800.1

Sequence Viewer

Length: 1182 bp
ATGATTCATGAAGTGGGAGAGCGCTTTGTGTTTCAATTTGAACGTGAGGCTGAACGAAACAAGATCCTGCATGGAGGACCTTGGTTTTATAGAAATACGATGGTGGTCCTAGGAGGTTATGACGGTATCGGTCTGGTGCATGAGGTTCCCCTGAATCTGGTGGAAGCATGGGTCGCCGTTAAGGGCCTTCCGGTGGGTCTCCGCAATAAGGCGGCGCTGACCTTGGTGGGATCTGCTCTGGGGCGTGTGATACACTTCGATCAGAATGCCCTATATCGGAAGGAATCAGAGCAAAGGATCCGGTTGGTTTTTGATGTCCGGCGGCGACTTAGGGTTTGGATGCTTTTCGAGTTTTCCATGACGGTGGCGCCGGAACTGTCGTTCAACTTTGAAAAGGTCAGAGGTTTCTGTCGGAGCTGTGGTTTCTTTCTCCATGGTGAGACAGGCTGTGATGCCAGGTTGACTAAGGAGAGAGATGAGATCATGGCTCAGATCCAAGCCGCGGCTATGGCTGGGTTATCATTGACTGGAGGGGAACGTGGGCCTCGGACTGATGGAGAAGAGATGCAGGTTCATGGGGAGATGGTGAGTGTGGCGGCACCAGTGGTAGAGGGGCCGGTGTTAGTGGGAACTGAACCACCACATCAATCCTCGCTGGTGAGTAACATTCAGCTTTTTCCGTCGCTGTTCGGGGAGTTGGACCTAGCTGAGTTTTTGGCAACTTGGACTAAGCGGGCTGGCCATATTCCTTTTGGTAACGTGGGGAAGACATCATCGGGGGATGTAATCGAGCCCCTGTGCATGGAGAAGGGGCAAGGTACAGAAGTGGTGGTTGCTTCACATCAGAGCTATCCTGTTTCAGGAACTAAGCGTAAAGTTGTGGAGGGACTGGGGCGTTTGGGGAAGAGAGGTGTGTCTTGCACTGAACCTTTACTCCAAGTTGACGATGGGATGCAGCTTGTCCTGCAACACAAGCATGGTCAGCTGATTGTTTCACCAAGGAAGAAGAAGTTAGGTAGACCAAAGGGAAGTAAGAACAGACCGAAGTGTGCAAAGGTTCTGGGGATTGAGTTCCAGGGTAGGCAATCTAAGAAGTGGAAGCTTCGGGAAAGTGATCGCTCTGGTCAAGTTTTGGAGGAAAAAGATATGAGCAGTACCTCTGAGATGGAGCAGTACCTCTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

43.7

Weight (kDa)

9.04

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 104 - 151 3.6e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019340)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0368701
rosa_laevigata RLG00000027196
rosa_multiflora Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa Rorug01G0343800
rosa_samantha Rh1AG351300 Rh1BG315000
rosa_wichuraiana Rw0G021690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 559
AccB1I GGYRCC 2 cut(s) 367, 598
AccI GTMKAC 1 cut(s) 1018
AccII CGCG 1 cut(s) 503
AciI CCGC 7 cut(s) 202, 212, 322, 501, 503, 596, 733
AclWI GGATC 5 cut(s) 58, 238, 292, 305, 487
AcoI YGGCCR 1 cut(s) 739
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 3 cut(s) 820, 1156, 1175
AfeI AGCGCT 1 cut(s) 23
AfiI CCNNNNNNNGG 7 cut(s) 157, 193, 208, 276, 502, 802, 860
AgsI TTSAA 4 cut(s) 35, 41, 385, 392
AjnI CCWGG 2 cut(s) 455, 1074
AloI GAACNNNNNNTCC 4 cut(s) 365, 397, 918, 950
AluBI AGCT 7 cut(s) 417, 673, 707, 849, 958, 985, 1102
AluI AGCT 7 cut(s) 417, 673, 707, 849, 958, 985, 1102
Alw26I GTCTC 2 cut(s) 203, 434
AlwI GGATC 5 cut(s) 58, 238, 292, 305, 487
Aor51HI AGCGCT 1 cut(s) 23
AoxI GGCC 4 cut(s) 184, 542, 614, 739
ApeKI GCWGC 1 cut(s) 955
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspA2I CCTAGG 1 cut(s) 109
AspLEI GCGC 3 cut(s) 24, 217, 370
AspS9I GGNCC 6 cut(s) 77, 106, 184, 542, 614, 700
AsuHPI GGTGA 4 cut(s) 449, 598, 670, 987
AvaII GGWCC 3 cut(s) 77, 106, 700
AvrII CCTAGG 1 cut(s) 109
BaeI ACNNNNGTAYC 2 cut(s) 810, 843
BalI TGGCCA 1 cut(s) 741
BamHI GGATCC 1 cut(s) 297
BanI GGYRCC 2 cut(s) 367, 598
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 773
BbvI GCAGC 1 cut(s) 967
BccI CCATC 5 cut(s) 94, 548, 577, 941, 1159
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 2 cut(s) 457, 1076
BcoDI GTCTC 2 cut(s) 203, 434
BfaI CTAG 2 cut(s) 110, 704
BfoI RGCGCY 3 cut(s) 25, 218, 371
BfuAI ACCTGC 1 cut(s) 559
BisI GCNGC 6 cut(s) 213, 323, 501, 504, 597, 956
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 6 cut(s) 214, 324, 502, 505, 598, 957
Bme1390I CCNGG 2 cut(s) 457, 1076
Bme18I GGWCC 3 cut(s) 77, 106, 700
BmgT120I GGNCC 6 cut(s) 77, 106, 184, 542, 614, 700
BmiI GGNNCC 5 cut(s) 147, 299, 369, 600, 615
BmrFI CCNGG 2 cut(s) 457, 1076
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 4 cut(s) 330, 442, 555, 942
BmuI ACTGGG 1 cut(s) 899
BpiI GAAGAC 1 cut(s) 773
BpmI CTGGAG 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 8 cut(s) 80, 109, 222, 433, 501, 545, 998, 1075
BsaWI WCCGGW 2 cut(s) 190, 300
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 918, 948
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 193, 208, 276, 502, 802, 860
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 3 cut(s) 532, 602, 894
BseBI CCWGG 2 cut(s) 457, 1076
BseDI CCNNGG 8 cut(s) 80, 109, 222, 433, 501, 545, 998, 1075
BseGI GGATG 3 cut(s) 345, 787, 957
BseLI CCNNNNNNNGG 7 cut(s) 157, 193, 208, 276, 502, 802, 860
BseMII CTCAG 3 cut(s) 503, 699, 1152
BseNI ACTGG 3 cut(s) 532, 602, 894
BseXI GCAGC 1 cut(s) 967
BseYI CCCAGC 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 503
BshFI GGCC 4 cut(s) 186, 544, 616, 741
BshNI GGYRCC 2 cut(s) 367, 598
BsiSI CCGG 5 cut(s) 191, 301, 319, 371, 617
BslFI GGGAC 1 cut(s) 900
BslI CCNNNNNNNGG 7 cut(s) 157, 193, 208, 276, 502, 802, 860
BsmAI GTCTC 2 cut(s) 203, 434
BsmFI GGGAC 1 cut(s) 900
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 4 cut(s) 186, 544, 616, 741
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 795
Bsp143I GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 7 cut(s) 202, 212, 322, 501, 503, 596, 733
BspANI GGCC 4 cut(s) 186, 544, 616, 741
BspCNI CTCAG 3 cut(s) 502, 700, 1153
BspFNI CGCG 1 cut(s) 503
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 5 cut(s) 147, 299, 369, 600, 615
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 5 cut(s) 58, 238, 292, 305, 487
BspT107I GGYRCC 2 cut(s) 367, 598
BspTNI GGTCTC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 3 cut(s) 532, 602, 894
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 8 cut(s) 80, 109, 222, 433, 501, 545, 998, 1075
BssMI GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 5 cut(s) 80, 109, 222, 433, 998
Bst2UI CCWGG 2 cut(s) 457, 1076
Bst4CI ACNGT 3 cut(s) 125, 364, 378
Bst6I CTCTTC 2 cut(s) 555, 899
BstACI GRCGYC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 735, 739
BstDEI CTNAG 8 cut(s) 329, 465, 489, 708, 729, 867, 1089, 1161
BstDSI CCRYGG 2 cut(s) 433, 501
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 3 cut(s) 345, 787, 957
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 3 cut(s) 25, 218, 371
BstHHI GCGC 3 cut(s) 24, 217, 370
BstKTI GATC 7 cut(s) 66, 233, 262, 300, 483, 495, 1117
BstMAI GTCTC 2 cut(s) 203, 434
BstMBI GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 173, 509, 964, 973, 982
BstNI CCWGG 2 cut(s) 457, 1076
BstSCI CCNGG 2 cut(s) 455, 1074
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 967
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 4 cut(s) 63, 230, 297, 492
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 4 cut(s) 63, 230, 297, 492
BsuRI GGCC 4 cut(s) 186, 544, 616, 741
BtgI CCRYGG 2 cut(s) 433, 501
BtsCI GGATG 3 cut(s) 345, 787, 957
BtsIMutI CAGTG 2 cut(s) 609, 921
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 735, 739
CciI TCATGA 1 cut(s) 7
CfoI GCGC 3 cut(s) 24, 217, 370
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 6 cut(s) 77, 106, 184, 542, 614, 700
Cfr42I CCGCGG 1 cut(s) 504
Csp6I GTAC 3 cut(s) 819, 1155, 1174
CviQI GTAC 3 cut(s) 819, 1155, 1174
DdeI CTNAG 8 cut(s) 329, 465, 489, 708, 729, 867, 1089, 1161
DinI GGCGCC 1 cut(s) 369
DpnI GATC 7 cut(s) 65, 232, 261, 299, 482, 494, 1116
DpnII GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
EaeI YGGCCR 1 cut(s) 739
Eam1104I CTCTTC 2 cut(s) 555, 899
EarI CTCTTC 2 cut(s) 555, 899
Eco130I CCWWGG 5 cut(s) 80, 109, 222, 433, 998
Eco24I GRGCYC 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 3 cut(s) 77, 106, 700
Eco47III AGCGCT 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoO109I RGGNCCY 2 cut(s) 77, 184
EcoRII CCWGG 2 cut(s) 455, 1074
EcoT14I CCWWGG 5 cut(s) 80, 109, 222, 433, 998
EcoT38I GRGCYC 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
ErhI CCWWGG 5 cut(s) 80, 109, 222, 433, 998
FaqI GGGAC 1 cut(s) 900
FauI CCCGC 1 cut(s) 726
FblI GTMKAC 1 cut(s) 1018
Fnu4HI GCNGC 6 cut(s) 213, 323, 501, 504, 597, 956
FokI GGATG 3 cut(s) 352, 794, 964
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 6 cut(s) 213, 323, 501, 504, 597, 956
FspBI CTAG 2 cut(s) 110, 704
GlaI GCGC 3 cut(s) 23, 216, 369
GluI GCNGC 6 cut(s) 213, 323, 501, 504, 597, 956
GsaI CCCAGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 549
HaeII RGCGCY 3 cut(s) 25, 218, 371
HaeIII GGCC 4 cut(s) 186, 544, 616, 741
HapII CCGG 5 cut(s) 191, 301, 319, 371, 617
HhaI GCGC 3 cut(s) 24, 217, 370
Hin1I GRCGYC 1 cut(s) 368
Hin6I GCGC 3 cut(s) 22, 215, 368
HinP1I GCGC 3 cut(s) 22, 215, 368
HincII GTYRAC 2 cut(s) 462, 943
HindII GTYRAC 2 cut(s) 462, 943
HindIII AAGCTT 1 cut(s) 1100
HinfI GANTC 3 cut(s) 4, 154, 284
HpaII CCGG 5 cut(s) 191, 301, 319, 371, 617
HphI GGTGA 4 cut(s) 449, 598, 670, 987
Hpy166II GTNNAC 3 cut(s) 462, 943, 1019
Hpy188III TCNNGA 3 cut(s) 8, 861, 1106
Hpy8I GTNNAC 3 cut(s) 462, 943, 1019
Hpy99I CGWCG 1 cut(s) 685
HpyAV CCTTC 3 cut(s) 197, 274, 802
HpyCH4III ACNGT 3 cut(s) 125, 364, 378
HpyCH4IV ACGT 3 cut(s) 43, 538, 759
HpyCH4V TGCA 8 cut(s) 70, 139, 568, 801, 921, 955, 967, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 509, 964, 973, 982
HpyF3I CTNAG 8 cut(s) 329, 465, 489, 708, 729, 867, 1089, 1161
HpySE526I ACGT 3 cut(s) 43, 538, 759
Hsp92I GRCGYC 1 cut(s) 368
HspAI GCGC 3 cut(s) 22, 215, 368
KasI GGCGCC 1 cut(s) 367
KspI CCGCGG 1 cut(s) 504
Kzo9I GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
LmnI GCTCC 2 cut(s) 414, 1168
Lsp1109I GCAGC 1 cut(s) 967
LweI GCATC 4 cut(s) 330, 442, 555, 942
MaeI CTAG 2 cut(s) 110, 704
MaeII ACGT 3 cut(s) 43, 538, 759
MaeIII GTNAC 2 cut(s) 662, 755
MalI GATC 7 cut(s) 65, 232, 261, 299, 482, 494, 1116
MboI GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
MboII GAAGA 5 cut(s) 572, 778, 916, 1015, 1018
MflI RGATCY 4 cut(s) 63, 230, 297, 492
MhlI GDGCHC 1 cut(s) 795
MlsI TGGCCA 1 cut(s) 741
MluCI AATT 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 741
Mly113I GGCGCC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 392, 678
Mox20I TGGCCA 1 cut(s) 741
MscI TGGCCA 1 cut(s) 741
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 2 cut(s) 362, 975
Msp20I TGGCCA 1 cut(s) 741
MspA1I CMGCKG 2 cut(s) 503, 985
MspI CCGG 5 cut(s) 191, 301, 319, 371, 617
MspR9I CCNGG 2 cut(s) 457, 1076
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 2 cut(s) 457, 1076
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 5 cut(s) 173, 509, 964, 973, 982
NarI GGCGCC 1 cut(s) 368
NcoI CCATGG 1 cut(s) 433
NdeII GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
NlaIV GGNNCC 5 cut(s) 147, 299, 369, 600, 615
PagI TCATGA 1 cut(s) 7
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 4, 154, 284
PkrI GCNGC 6 cut(s) 214, 324, 502, 505, 598, 957
PluTI GGCGCC 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 455, 1074
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 2 cut(s) 455, 1074
PspN4I GGNNCC 5 cut(s) 147, 299, 369, 600, 615
PspPI GGNCC 6 cut(s) 77, 106, 184, 542, 614, 700
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 4 cut(s) 63, 230, 297, 492
PvuII CAGCTG 1 cut(s) 985
RsaI GTAC 3 cut(s) 820, 1156, 1175
RsaNI GTAC 3 cut(s) 819, 1155, 1174
RseI CAYNNNNRTG 2 cut(s) 362, 975
SacII CCGCGG 1 cut(s) 504
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 6 cut(s) 213, 323, 501, 504, 597, 956
Sau3AI GATC 7 cut(s) 63, 230, 259, 297, 480, 492, 1114
Sau96I GGNCC 6 cut(s) 77, 106, 184, 542, 614, 700
ScrFI CCNGG 2 cut(s) 457, 1076
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 4 cut(s) 330, 442, 555, 942
SfoI GGCGCC 1 cut(s) 369
Sfr303I CCGCGG 1 cut(s) 504
SgrBI CCGCGG 1 cut(s) 504
SinI GGWCC 3 cut(s) 77, 106, 700
SmiMI CAYNNNNRTG 2 cut(s) 362, 975
Sse9I AATT 1 cut(s) 35
SsiI CCGC 7 cut(s) 202, 212, 322, 501, 503, 596, 733
SspDI GGCGCC 1 cut(s) 367
SspMI CTAG 2 cut(s) 110, 704
StyD4I CCNGG 2 cut(s) 455, 1074
StyI CCWWGG 5 cut(s) 80, 109, 222, 433, 998
TaaI ACNGT 3 cut(s) 125, 364, 378
TaiI ACGT 3 cut(s) 46, 541, 762
TaqI TCGA 3 cut(s) 258, 348, 789
TaqII GACCGA 2 cut(s) 119, 1057
TasI AATT 1 cut(s) 35
TauI GCSGC 5 cut(s) 215, 325, 503, 506, 599
TfiI GAWTC 3 cut(s) 4, 154, 284
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 609, 928
TseI GCWGC 1 cut(s) 955
TspDTI ATGAA 2 cut(s) 24, 563
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 2 cut(s) 609, 928
VpaK11BI GGWCC 3 cut(s) 77, 106, 700
XagI CCTNNNNNAGG 1 cut(s) 858
XcmI CCANNNNNNNNNTGG 2 cut(s) 749, 944
XmaJI CCTAGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 1018
XspI CTAG 2 cut(s) 110, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.