Rmu_sc0001791.1_g000013
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001791.1
OG0019340
Physical Location & Seq
Reverse (-)
71941 .. 74880
2940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001791.1_g000013.1.cds

Sequence Viewer

Length: 1233 bp
atgagtggcggacttcacaacaacccaaaggggctcccggttaatgacccagaaagtactagaattgaagggggagctatattgcagtctttcagcttgaagatcttctgctataatgaactgaaaaaggccaccaggaacttccgttttaaaaatattgtgggttttggtgattctaatacagtctacaagggatgtattgatgagcattcactcaaggccaccaagcctggtaccggcatagacatcgccataaagatgcctagcagaaaagagaggttccggctgcaggatcaccaggacttgttggtgacagaatttaaccgccttggacagcttattcatccaaatcttgtaaaaatgattggctactgtctagaggataacaatgggctcctggtgtatgaatttatgcctcgaggcagcttgggagtacatctacattcaagggatcctcaatcacaaccgctttcatggaaccttcgcatgaagattgcgcttagtgctgctaagggtctagcatttcttcacggtgacaaggcaaaaatgatatacggggacttcaaaccttctaatattcttcttgattcaaactatgaagccaaaatctatggttatggcttggtagaggatgatgagcttgaaggttatagaaggcttagaggccatgacactgaatgctctctggattcatcgtacgcagctcccgagtatcttacggacacacagagaggagaatatgagtacagatttgaaagcagcgatgatgatgaaatggatgactttgttcgcttgagtcccaaaagtgatgtctacagttttgggattgttctgctcgaaatgaaatccggcagacaacctcttgacaatacgaagccaatgaaagagcgcaagttagtgcaatgggcgaagccttacctttccagaagaagaaaaattctcaaaattattgatgatcgtattgaaggccagtactccaaaggtggagctattagagcagctaagcttgtagctcaatgcttatcactagatcccaagggaaggccgaacatgaatgatgtggtaaaagcattggagcagcttcaggaatccagtggcatggctggctttggaatttgtgaagatgaaccttcctgcagaaatcaaaatataggcaaggacttcaatgatgaaatagcctcaaagagcctgatgaacgagcaattggagcgtagaaaacatgctggcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

410

Amino Acids

46.42

Weight (kDa)

8.02

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019340)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0368701
rosa_laevigata RLG00000027196
rosa_multiflora Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa Rorug01G0343800
rosa_samantha Rh1AG351300 Rh1BG315000
rosa_wichuraiana Rw0G021690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 2 cut(s) 186, 813
AciI CCGC 3 cut(s) 9, 325, 467
AclWI GGATC 4 cut(s) 300, 446, 459, 1025
AcsI RAATTY 4 cut(s) 317, 407, 936, 1113
AcuI CTGAAG 1 cut(s) 1067
AfaI GTAC 6 cut(s) 58, 235, 435, 698, 746, 974
AfiI CCNNNNNNNGG 3 cut(s) 236, 289, 1041
AgsI TTSAA 9 cut(s) 68, 100, 447, 565, 591, 644, 755, 965, 1165
AjnI CCWGG 4 cut(s) 134, 229, 297, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 1187, 1219
AlwI GGATC 4 cut(s) 300, 446, 459, 1025
Ama87I CYCGRG 2 cut(s) 417, 707
AoxI GGCC 5 cut(s) 129, 219, 664, 967, 1043
ApeKI GCWGC 7 cut(s) 286, 423, 506, 701, 759, 998, 1078
ApoI RAATTY 4 cut(s) 317, 407, 936, 1113
ArsI GACNNNNNNTTYG 2 cut(s) 795, 827
Asp700I GAANNNNTTC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 499, 891
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 4 cut(s) 182, 287, 322, 545
AvaI CYCGRG 2 cut(s) 417, 707
BamHI GGATCC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 36, 396
BbvI GCAGC 7 cut(s) 273, 435, 493, 713, 771, 1010, 1090
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 4 cut(s) 136, 231, 299, 398
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 5 cut(s) 60, 264, 377, 518, 1028
BfmI CTRYAG 3 cut(s) 287, 814, 1135
BglII AGATCT 1 cut(s) 102
BisI GCNGC 7 cut(s) 287, 424, 507, 702, 760, 999, 1079
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 7 cut(s) 288, 425, 508, 703, 761, 1000, 1080
BmcAI AGTACT 2 cut(s) 58, 974
Bme1390I CCNGG 5 cut(s) 38, 136, 231, 299, 398
BmeT110I CYCGRG 2 cut(s) 417, 707
BmiI GGNNCC 6 cut(s) 35, 235, 281, 395, 453, 479
BmrFI CCNGG 5 cut(s) 38, 136, 231, 299, 398
BmsI GCATC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 200, 814
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 328, 1035
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 289, 1041
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 970, 1092
Bse3DI GCAATG 1 cut(s) 908
BseBI CCWGG 4 cut(s) 136, 231, 299, 398
BseDI CCNNGG 2 cut(s) 328, 1035
BseGI GGATG 4 cut(s) 200, 343, 637, 784
BseLI CCNNNNNNNGG 3 cut(s) 236, 289, 1041
BseMI GCAATG 1 cut(s) 908
BseNI ACTGG 2 cut(s) 970, 1092
BseRI GAGGAG 1 cut(s) 747
BseXI GCAGC 7 cut(s) 273, 435, 493, 713, 771, 1010, 1090
BshFI GGCC 5 cut(s) 131, 221, 666, 969, 1045
BshNI GGYRCC 1 cut(s) 233
BsiHKCI CYCGRG 2 cut(s) 417, 707
BsiSI CCGG 4 cut(s) 38, 237, 283, 849
BsiWI CGTACG 1 cut(s) 696
BslFI GGGAC 2 cut(s) 572, 783
BslI CCNNNNNNNGG 3 cut(s) 236, 289, 1041
BsmFI GGGAC 2 cut(s) 572, 783
BsmI GAATGC 2 cut(s) 208, 683
BsnI GGCC 5 cut(s) 131, 221, 666, 969, 1045
BsoBI CYCGRG 2 cut(s) 417, 707
Bsp1286I GDGCHC 2 cut(s) 36, 396
Bsp143I GATC 5 cut(s) 102, 292, 451, 955, 1030
Bsp1720I GCTNAGC 1 cut(s) 1002
BspACI CCGC 3 cut(s) 9, 325, 467
BspANI GGCC 5 cut(s) 131, 221, 666, 969, 1045
BspLI GGNNCC 6 cut(s) 35, 235, 281, 395, 453, 479
BspMAI CTGCAG 2 cut(s) 291, 1139
BspPI GGATC 4 cut(s) 300, 446, 459, 1025
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 908
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 2 cut(s) 970, 1092
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 328, 1035
BssMI GATC 5 cut(s) 102, 292, 451, 955, 1030
BssT1I CCWWGG 2 cut(s) 328, 1035
Bst2UI CCWGG 4 cut(s) 136, 231, 299, 398
Bst4CI ACNGT 4 cut(s) 184, 374, 533, 818
BstC8I GCNNGC 2 cut(s) 1105, 1225
BstDEI CTNAG 4 cut(s) 500, 510, 659, 1002
BstF5I GGATG 4 cut(s) 200, 343, 637, 784
BstHHI GCGC 2 cut(s) 499, 891
BstKTI GATC 5 cut(s) 105, 295, 454, 958, 1033
BstMBI GATC 5 cut(s) 102, 292, 451, 955, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 503, 995, 1104, 1207
BstNI CCWGG 4 cut(s) 136, 231, 299, 398
BstNSI RCATGY 1 cut(s) 1223
BstSCI CCNGG 5 cut(s) 36, 134, 229, 297, 396
BstSFI CTRYAG 3 cut(s) 287, 814, 1135
BstV1I GCAGC 7 cut(s) 273, 435, 493, 713, 771, 1010, 1090
BstX2I RGATCY 3 cut(s) 102, 451, 1030
BstXI CCANNNNNNTGG 1 cut(s) 1099
BstYI RGATCY 3 cut(s) 102, 451, 1030
BsuRI GGCC 5 cut(s) 131, 221, 666, 969, 1045
BtgZI GCGATG 2 cut(s) 232, 777
BtsCI GGATG 4 cut(s) 200, 343, 637, 784
BtsIMutI CAGTG 2 cut(s) 672, 1099
Cac8I GCNNGC 2 cut(s) 1105, 1225
CfoI GCGC 2 cut(s) 499, 891
Cfr10I RCCGGY 1 cut(s) 236
Csp6I GTAC 6 cut(s) 57, 234, 434, 697, 745, 973
CviAII CATG 6 cut(s) 474, 487, 668, 1051, 1099, 1220
CviQI GTAC 6 cut(s) 57, 234, 434, 697, 745, 973
DdeI CTNAG 4 cut(s) 500, 510, 659, 1002
DpnI GATC 5 cut(s) 104, 294, 453, 957, 1032
DpnII GATC 5 cut(s) 102, 292, 451, 955, 1030
DraI TTTAAA 1 cut(s) 151
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 328, 1035
Eco24I GRGCYC 2 cut(s) 36, 396
Eco57I CTGAAG 1 cut(s) 1067
Eco88I CYCGRG 2 cut(s) 417, 707
EcoRII CCWGG 4 cut(s) 134, 229, 297, 396
EcoT14I CCWWGG 2 cut(s) 328, 1035
EcoT38I GRGCYC 2 cut(s) 36, 396
ErhI CCWWGG 2 cut(s) 328, 1035
FaeI CATG 6 cut(s) 477, 490, 671, 1054, 1102, 1223
FaqI GGGAC 2 cut(s) 572, 783
FatI CATG 6 cut(s) 473, 486, 667, 1050, 1098, 1219
FblI GTMKAC 2 cut(s) 186, 813
Fnu4HI GCNGC 7 cut(s) 287, 424, 507, 702, 760, 999, 1079
FokI GGATG 4 cut(s) 207, 330, 644, 791
FriOI GRGCYC 2 cut(s) 36, 396
Fsp4HI GCNGC 7 cut(s) 287, 424, 507, 702, 760, 999, 1079
FspBI CTAG 5 cut(s) 60, 264, 377, 518, 1028
GlaI GCGC 2 cut(s) 498, 890
GluI GCNGC 7 cut(s) 287, 424, 507, 702, 760, 999, 1079
HaeIII GGCC 5 cut(s) 131, 221, 666, 969, 1045
HapII CCGG 4 cut(s) 38, 237, 283, 849
HhaI GCGC 2 cut(s) 499, 891
Hin1II CATG 6 cut(s) 477, 490, 671, 1054, 1102, 1223
Hin6I GCGC 2 cut(s) 497, 889
HinP1I GCGC 2 cut(s) 497, 889
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 5 cut(s) 173, 587, 689, 796, 1088
HpaII CCGG 4 cut(s) 38, 237, 283, 849
HphI GGTGA 4 cut(s) 182, 287, 322, 545
Hpy166II GTNNAC 2 cut(s) 187, 814
Hpy188III TCNNGA 7 cut(s) 377, 584, 686, 707, 863, 924, 1085
Hpy8I GTNNAC 2 cut(s) 187, 814
HpyAV CCTTC 8 cut(s) 62, 491, 579, 638, 648, 959, 1035, 1140
HpyCH4III ACNGT 4 cut(s) 184, 374, 533, 818
HpyCH4V TGCA 4 cut(s) 85, 289, 901, 1137
HpyF10VI GCNNNNNNNGC 4 cut(s) 503, 995, 1104, 1207
HpyF3I CTNAG 4 cut(s) 500, 510, 659, 1002
Hsp92II CATG 6 cut(s) 477, 490, 671, 1054, 1102, 1223
HspAI GCGC 2 cut(s) 497, 889
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 5 cut(s) 102, 292, 451, 955, 1030
LmnI GCTCC 7 cut(s) 39, 74, 399, 709, 986, 1075, 1207
Lsp1109I GCAGC 7 cut(s) 273, 435, 493, 713, 771, 1010, 1090
LweI GCATC 1 cut(s) 249
MaeI CTAG 5 cut(s) 60, 264, 377, 518, 1028
MaeIII GTNAC 2 cut(s) 310, 533
MalI GATC 5 cut(s) 104, 294, 453, 957, 1032
MboI GATC 5 cut(s) 102, 292, 451, 955, 1030
MboII GAAGA 8 cut(s) 97, 112, 502, 518, 572, 939, 942, 1133
MfeI CAATTG 1 cut(s) 1202
MflI RGATCY 3 cut(s) 102, 451, 1030
MhlI GDGCHC 2 cut(s) 36, 396
MluCI AATT 7 cut(s) 63, 317, 407, 936, 945, 1113, 1202
MlyI GAGTC 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 3 cut(s) 42, 150, 321
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 4 cut(s) 38, 237, 283, 849
MspR9I CCNGG 5 cut(s) 38, 136, 231, 299, 398
MunI CAATTG 1 cut(s) 1202
Mva1269I GAATGC 2 cut(s) 208, 683
MvaI CCWGG 4 cut(s) 136, 231, 299, 398
MwoI GCNNNNNNNGC 4 cut(s) 503, 995, 1104, 1207
NciI CCSGG 1 cut(s) 38
NdeII GATC 5 cut(s) 102, 292, 451, 955, 1030
NlaIII CATG 6 cut(s) 477, 490, 671, 1054, 1102, 1223
NlaIV GGNNCC 6 cut(s) 35, 235, 281, 395, 453, 479
NmuCI GTSAC 2 cut(s) 310, 533
NspI RCATGY 1 cut(s) 1223
PaeR7I CTCGAG 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PctI GAATGC 2 cut(s) 208, 683
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 4 cut(s) 173, 587, 689, 1088
Pfl23II CGTACG 1 cut(s) 696
PkrI GCNGC 7 cut(s) 288, 425, 508, 703, 761, 1000, 1080
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
Psp6I CCWGG 4 cut(s) 134, 229, 297, 396
PspGI CCWGG 4 cut(s) 134, 229, 297, 396
PspLI CGTACG 1 cut(s) 696
PspN4I GGNNCC 6 cut(s) 35, 235, 281, 395, 453, 479
PspXI VCTCGAGB 1 cut(s) 417
PstI CTGCAG 2 cut(s) 291, 1139
PsuI RGATCY 3 cut(s) 102, 451, 1030
RsaI GTAC 6 cut(s) 58, 235, 435, 698, 746, 974
RsaNI GTAC 6 cut(s) 57, 234, 434, 697, 745, 973
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 42, 150, 321
SatI GCNGC 7 cut(s) 287, 424, 507, 702, 760, 999, 1079
Sau3AI GATC 5 cut(s) 102, 292, 451, 955, 1030
ScaI AGTACT 2 cut(s) 58, 974
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 5 cut(s) 38, 136, 231, 299, 398
SduI GDGCHC 2 cut(s) 36, 396
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 3 cut(s) 287, 814, 1135
Sfr274I CTCGAG 1 cut(s) 417
SlaI CTCGAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 3 cut(s) 215, 417, 793
SmoI CTYRAG 3 cut(s) 215, 417, 793
Sse9I AATT 7 cut(s) 63, 317, 407, 936, 945, 1113, 1202
SsiI CCGC 3 cut(s) 9, 325, 467
SspI AATATT 2 cut(s) 157, 577
SspMI CTAG 5 cut(s) 60, 264, 377, 518, 1028
StyD4I CCNGG 5 cut(s) 36, 134, 229, 297, 396
StyI CCWWGG 2 cut(s) 328, 1035
TaaI ACNGT 4 cut(s) 184, 374, 533, 818
TaqI TCGA 2 cut(s) 418, 837
TasI AATT 7 cut(s) 63, 317, 407, 936, 945, 1113, 1202
TatI WGTACW 4 cut(s) 56, 433, 744, 972
TfiI GAWTC 4 cut(s) 173, 587, 689, 1088
Tru1I TTAA 3 cut(s) 42, 150, 321
Tru9I TTAA 3 cut(s) 42, 150, 321
TscAI CASTG 2 cut(s) 679, 1099
TseFI GTSAC 2 cut(s) 310, 533
TseI GCWGC 7 cut(s) 286, 423, 506, 701, 759, 998, 1078
Tsp45I GTSAC 2 cut(s) 310, 533
TspGWI ACGGA 2 cut(s) 134, 734
TspRI CASTG 2 cut(s) 679, 1099
XapI RAATTY 4 cut(s) 317, 407, 936, 1113
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 1 cut(s) 1223
XhoI CTCGAG 1 cut(s) 417
XmiI GTMKAC 2 cut(s) 186, 813
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 5 cut(s) 60, 264, 377, 518, 1028
ZrmI AGTACT 2 cut(s) 58, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.