RchiOBHm_Chr1g0370201

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008969
Physical Location & Seq
Forward (+)
59723419 .. 59725427
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59436

Sequence Viewer

Length: 1224 bp
ATGTTCAAGTTCTTCAACCGCAAGTTCAAGATCAGCGAGTTGAAGCCACCTCCCGACGTCAAGGACATCTTCTCCAAGTTCGCCGCCGGCGGGGAACTCATATCCCCCGATCAGTTCCATACGTTCTTGATCGAACACCAGGCCGAGAAATCCGTTTCTTTGGCCGATGCCAAGCGCATCCTACATGAGTTCTCCCTCCGACGACAGCATCTTACGGACCCGAAACACAAGAAAGACAAGAAACAGTCCAAAGAGAACAAAACTGCCGCGCCGGCCCACCAAACTCATGAGCACGGCCTCACTTTGGACGAATTCTTCAATTTCCTATTCGAGGAAGAATTCAACGGCCCCATCAAACGAGAGGTACACCATGATATGACTGCTCCGTTGTCGCATTATTTCATATATACAGGGCACAATTCGTACCTTACTGGGAATCAACTCAGCAGTGACTGTAGTGATGTGCCAATCATTAAGGCTTTGGAGAGAGGGGTCAAAGTAATTGAGCTTGATTTATGGCCAACGTCTTCGAAACAGGATGTTCAAGTTTATCATGGAAGGACCTTGACGGCTCCTGTGACACTCGTCAAATGCTTGAAATCCATTAAAGAACATGCTTTTGATAAATCTCCATACCCTGTTGTTATTACTTTTGAAGACCACCTTACGACCAAGCTTCGGTGTATTGTTGCAGAGATGGTTACCCAAATATTTGGAGATATGTTGTATTATCCAAAGCCAGAAGACCCGATGACAGAATTTCCTTCACCTGAAGCTTTAAAATATCGGATTATTATCTCAACCAAGCCACCAAAAGTAGGTGAAGGTAATGACAAGGATTCATCTGAAGAATCAGAAAAGAGTGACTGCAGTGATAAAGAAACTGAGAGCAAAACTGCAGTTGACATCAAACCCATCCAGTCAGAAGCACCTGAGTATGCGGAACTTATAACAATCCATGCTGGAAAACCACAGGGTGGTTTGAAAGAGGCTCTAGAGGTTGGTGAAAAAGTAAGACGTCTTAGTTTGAGTGAACAAAAACTAGAAAAGGCTGCTGAAGATCATGGAGCTGATATTGTTAGGTTCACACAGAGGAACATTCTAAGGATCTACCCCAAGGGAACACGAGTTACCTCCTCGAATTACAAACCGCATGTTGGGTGGATGCATGGAGCTCAAATGGTTGCGTTTAATATGCAGCCAATGGAGGGTGCGGTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

407

Amino Acids

46.19

Weight (kDa)

6.56

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 126 - 269 1.5e-52 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 340 - 402 5.3e-18 Phosphatidylinositol-specific phospholipase C, Y domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 950
AatII GACGTC 2 cut(s) 60, 1021
AccB7I CCANNNNNTGG 1 cut(s) 977
AccII CGCG 1 cut(s) 269
AciI CCGC 7 cut(s) 19, 84, 90, 267, 941, 1151, 1214
AclWI GGATC 1 cut(s) 1115
AcoI YGGCCR 2 cut(s) 162, 518
AcsI RAATTY 3 cut(s) 311, 338, 758
AcuI CTGAAG 3 cut(s) 792, 867, 1077
AcyI GRCGYC 2 cut(s) 57, 1018
AdeI CACNNNGTG 1 cut(s) 977
AfaI GTAC 2 cut(s) 366, 425
AfiI CCNNNNNNNGG 8 cut(s) 90, 304, 331, 678, 818, 977, 1157, 1208
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 5 cut(s) 508, 676, 776, 1070, 1175
AluI AGCT 5 cut(s) 508, 676, 776, 1070, 1175
Alw21I GWGCWC 2 cut(s) 294, 1177
AlwI GGATC 1 cut(s) 1115
AlwNI CAGNNNCTG 1 cut(s) 453
AoxI GGCC 6 cut(s) 141, 162, 273, 295, 346, 518
ApeKI GCWGC 2 cut(s) 1052, 1198
ApoI RAATTY 3 cut(s) 311, 338, 758
AspLEI GCGC 2 cut(s) 177, 271
AspS9I GGNCC 4 cut(s) 217, 274, 347, 561
AsuHPI GGTGA 3 cut(s) 759, 833, 1016
AsuII TTCGAA 1 cut(s) 530
AvaII GGWCC 2 cut(s) 217, 561
BaeGI GKGCMC 1 cut(s) 417
BalI TGGCCA 1 cut(s) 520
BanII GRGCYC 1 cut(s) 1177
BauI CACGAG 1 cut(s) 1125
BbsI GAAGAC 3 cut(s) 519, 663, 750
Bbv12I GWGCWC 2 cut(s) 294, 1177
BbvI GCAGC 2 cut(s) 1039, 1210
BccI CCATC 3 cut(s) 359, 691, 923
BceAI ACGGC 3 cut(s) 310, 361, 585
BciT130I CCWGG 1 cut(s) 140
BfaI CTAG 2 cut(s) 995, 1043
BfmI CTRYAG 3 cut(s) 454, 868, 897
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 84, 267, 1053, 1199
BlsI GCNGC 4 cut(s) 85, 268, 1054, 1200
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 217, 561
BmgT120I GGNCC 4 cut(s) 217, 274, 347, 561
BmiI GGNNCC 3 cut(s) 219, 349, 573
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 4 cut(s) 157, 186, 217, 1155
BmuI ACTGGG 1 cut(s) 441
BoxI GACNNNNGTC 1 cut(s) 584
BpiI GAAGAC 3 cut(s) 519, 663, 750
Bpu14I TTCGAA 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 1221
BsaBI GATNNNNATC 1 cut(s) 794
BsaHI GRCGYC 2 cut(s) 57, 1018
BsaJI CCNNGG 1 cut(s) 1116
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 8 cut(s) 90, 304, 331, 678, 818, 977, 1157, 1208
Bse118I RCCGGY 2 cut(s) 86, 271
Bse1I ACTGG 2 cut(s) 436, 919
Bse8I GATNNNNATC 1 cut(s) 794
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 1116
BseGI GGATG 4 cut(s) 177, 544, 915, 1170
BseJI GATNNNNATC 1 cut(s) 794
BseLI CCNNNNNNNGG 8 cut(s) 90, 304, 331, 678, 818, 977, 1157, 1208
BseMII CTCAG 3 cut(s) 457, 876, 924
BseNI ACTGG 2 cut(s) 436, 919
BseRI GAGGAG 1 cut(s) 1126
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 2 cut(s) 1039, 1210
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 6 cut(s) 143, 164, 275, 297, 348, 520
BsiHKAI GWGCWC 2 cut(s) 294, 1177
BsiSI CCGG 2 cut(s) 87, 272
BslI CCNNNNNNNGG 8 cut(s) 90, 304, 331, 678, 818, 977, 1157, 1208
BsnI GGCC 6 cut(s) 143, 164, 275, 297, 348, 520
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 294, 417, 1177
Bsp143I GATC 5 cut(s) 30, 109, 129, 1060, 1107
BspACI CCGC 7 cut(s) 19, 84, 90, 267, 941, 1151, 1214
BspANI GGCC 6 cut(s) 143, 164, 275, 297, 348, 520
BspCNI CTCAG 3 cut(s) 456, 877, 925
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 219, 349, 573
BspMAI CTGCAG 2 cut(s) 872, 901
BspPI GGATC 1 cut(s) 1115
BspT104I TTCGAA 1 cut(s) 530
BsrFI RCCGGY 2 cut(s) 86, 271
BsrI ACTGG 2 cut(s) 436, 919
BssAI RCCGGY 2 cut(s) 86, 271
BssECI CCNNGG 1 cut(s) 1116
BssMI GATC 5 cut(s) 30, 109, 129, 1060, 1107
BssNI GRCGYC 2 cut(s) 57, 1018
BssSI CACGAG 1 cut(s) 1125
BssT1I CCWWGG 1 cut(s) 1116
Bst2BI CACGAG 1 cut(s) 1125
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 246, 455
BstACI GRCGYC 2 cut(s) 57, 1018
BstBAI YACGTR 1 cut(s) 1221
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 88, 273
BstDEI CTNAG 5 cut(s) 443, 885, 933, 1022, 1103
BstEII GGTNACC 1 cut(s) 700
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 4 cut(s) 177, 544, 915, 1170
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 2 cut(s) 177, 271
BstKTI GATC 5 cut(s) 33, 112, 132, 1063, 1110
BstMBI GATC 5 cut(s) 30, 109, 129, 1060, 1107
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 2 cut(s) 617, 1157
BstPAI GACNNNNGTC 1 cut(s) 584
BstPI GGTNACC 1 cut(s) 700
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 3 cut(s) 454, 868, 897
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 1039, 1210
BstV2I GAAGAC 3 cut(s) 519, 663, 750
BstX2I RGATCY 1 cut(s) 1107
BstXI CCANNNNNNTGG 1 cut(s) 713
BstYI RGATCY 1 cut(s) 1107
BsuRI GGCC 6 cut(s) 143, 164, 275, 297, 348, 520
BtsCI GGATG 4 cut(s) 177, 544, 915, 1170
BtsI GCAGTG 2 cut(s) 454, 877
BtsIMutI CAGTG 2 cut(s) 454, 877
Cac8I GCNNGC 2 cut(s) 88, 273
CaiI CAGNNNCTG 1 cut(s) 453
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 177, 271
Cfr10I RCCGGY 2 cut(s) 86, 271
Cfr13I GGNCC 4 cut(s) 217, 274, 347, 561
Csp6I GTAC 2 cut(s) 365, 424
CviAII CATG 9 cut(s) 185, 287, 371, 554, 614, 959, 1064, 1154, 1169
CviQI GTAC 2 cut(s) 365, 424
DdeI CTNAG 5 cut(s) 443, 885, 933, 1022, 1103
DpnI GATC 5 cut(s) 32, 111, 131, 1062, 1109
DpnII GATC 5 cut(s) 30, 109, 129, 1060, 1107
DraI TTTAAA 1 cut(s) 780
DraIII CACNNNGTG 1 cut(s) 977
EaeI YGGCCR 2 cut(s) 162, 518
Ecl136II GAGCTC 1 cut(s) 1175
Eco130I CCWWGG 1 cut(s) 1116
Eco24I GRGCYC 1 cut(s) 1177
Eco47I GGWCC 2 cut(s) 217, 561
Eco53kI GAGCTC 1 cut(s) 1175
Eco57I CTGAAG 3 cut(s) 792, 867, 1077
Eco91I GGTNACC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 1175
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 561
EcoO65I GGTNACC 1 cut(s) 700
EcoRI GAATTC 2 cut(s) 311, 338
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 1116
EcoT22I ATGCAT 1 cut(s) 1170
EcoT38I GRGCYC 1 cut(s) 1177
ErhI CCWWGG 1 cut(s) 1116
FaeI CATG 9 cut(s) 188, 290, 374, 557, 617, 962, 1067, 1157, 1172
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 648, 680
FatI CATG 9 cut(s) 184, 286, 370, 553, 613, 958, 1063, 1153, 1168
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 84, 267, 1053, 1199
FokI GGATG 4 cut(s) 164, 551, 902, 1177
FriOI GRGCYC 1 cut(s) 1177
Fsp4HI GCNGC 4 cut(s) 84, 267, 1053, 1199
FspBI CTAG 2 cut(s) 995, 1043
GlaI GCGC 2 cut(s) 176, 270
GluI GCNGC 4 cut(s) 84, 267, 1053, 1199
HaeIII GGCC 6 cut(s) 143, 164, 275, 297, 348, 520
HapII CCGG 2 cut(s) 87, 272
HhaI GCGC 2 cut(s) 177, 271
Hin1I GRCGYC 2 cut(s) 57, 1018
Hin1II CATG 9 cut(s) 188, 290, 374, 557, 617, 962, 1067, 1157, 1172
Hin6I GCGC 2 cut(s) 175, 269
HinP1I GCGC 2 cut(s) 175, 269
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HindIII AAGCTT 2 cut(s) 674, 774
HinfI GANTC 3 cut(s) 436, 839, 851
HpaII CCGG 2 cut(s) 87, 272
HphI GGTGA 3 cut(s) 759, 833, 1016
Hpy166II GTNNAC 4 cut(s) 367, 904, 1034, 1086
Hpy188I TCNGA 5 cut(s) 200, 789, 847, 856, 925
Hpy188III TCNNGA 5 cut(s) 28, 53, 127, 287, 995
Hpy8I GTNNAC 4 cut(s) 367, 904, 1034, 1086
Hpy99I CGWCG 2 cut(s) 59, 204
HpyAV CCTTC 3 cut(s) 552, 774, 818
HpyCH4III ACNGT 2 cut(s) 246, 455
HpyCH4IV ACGT 5 cut(s) 57, 122, 524, 1018, 1220
HpyCH4V TGCA 5 cut(s) 692, 870, 899, 1168, 1198
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 5 cut(s) 443, 885, 933, 1022, 1103
HpySE526I ACGT 5 cut(s) 57, 122, 524, 1018, 1220
Hsp92I GRCGYC 2 cut(s) 57, 1018
Hsp92II CATG 9 cut(s) 188, 290, 374, 557, 617, 962, 1067, 1157, 1172
HspAI GCGC 2 cut(s) 175, 269
KroI GCCGGC 2 cut(s) 86, 271
KroNI GCCGGC 2 cut(s) 88, 273
Kzo9I GATC 5 cut(s) 30, 109, 129, 1060, 1107
LmnI GCTCC 4 cut(s) 388, 577, 1067, 1172
Lsp1109I GCAGC 2 cut(s) 1039, 1210
LweI GCATC 4 cut(s) 157, 186, 217, 1155
MaeI CTAG 2 cut(s) 995, 1043
MaeII ACGT 5 cut(s) 57, 122, 524, 1018, 1220
MaeIII GTNAC 6 cut(s) 449, 577, 700, 863, 1129, 1216
MalI GATC 5 cut(s) 32, 111, 131, 1062, 1109
MboI GATC 5 cut(s) 30, 109, 129, 1060, 1107
MboII GAAGA 9 cut(s) 4, 61, 307, 347, 519, 668, 755, 860, 1070
MflI RGATCY 1 cut(s) 1107
MhlI GDGCHC 3 cut(s) 294, 417, 1177
MlsI TGGCCA 1 cut(s) 520
MluCI AATT 7 cut(s) 311, 319, 338, 418, 501, 758, 1141
MluNI TGGCCA 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 223
Mox20I TGGCCA 1 cut(s) 520
Mph1103I ATGCAT 1 cut(s) 1170
MreI CGCCGGCG 1 cut(s) 86
MroNI GCCGGC 2 cut(s) 86, 271
MscI TGGCCA 1 cut(s) 520
MseI TTAA 4 cut(s) 474, 606, 779, 1191
Msp20I TGGCCA 1 cut(s) 520
MspI CCGG 2 cut(s) 87, 272
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 272
NaeI GCCGGC 2 cut(s) 88, 273
NdeII GATC 5 cut(s) 30, 109, 129, 1060, 1107
NgoMIV GCCGGC 2 cut(s) 86, 271
NlaIII CATG 9 cut(s) 188, 290, 374, 557, 617, 962, 1067, 1157, 1172
NlaIV GGNNCC 3 cut(s) 219, 349, 573
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 3 cut(s) 449, 577, 863
NsiI ATGCAT 1 cut(s) 1170
NspI RCATGY 2 cut(s) 617, 1157
NspV TTCGAA 1 cut(s) 530
PagI TCATGA 1 cut(s) 286
PdiI GCCGGC 2 cut(s) 88, 273
PfeI GAWTC 3 cut(s) 436, 839, 851
PflMI CCANNNNNTGG 1 cut(s) 977
PkrI GCNGC 4 cut(s) 85, 268, 1054, 1200
Ppu21I YACGTR 1 cut(s) 1221
PpuMI RGGWCCY 1 cut(s) 561
PshAI GACNNNNGTC 1 cut(s) 584
PsiI TTATAA 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 1177
Psp5II RGGWCCY 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 219, 349, 573
PspPI GGNCC 4 cut(s) 217, 274, 347, 561
PspPPI RGGWCCY 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 1114, 1146
PstI CTGCAG 2 cut(s) 872, 901
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 1107
RsaI GTAC 2 cut(s) 366, 425
RsaNI GTAC 2 cut(s) 365, 424
SacI GAGCTC 1 cut(s) 1177
SaqAI TTAA 4 cut(s) 474, 606, 779, 1191
SatI GCNGC 4 cut(s) 84, 267, 1053, 1199
Sau3AI GATC 5 cut(s) 30, 109, 129, 1060, 1107
Sau96I GGNCC 4 cut(s) 217, 274, 347, 561
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 3 cut(s) 294, 417, 1177
SfaNI GCATC 4 cut(s) 157, 186, 217, 1155
SfcI CTRYAG 3 cut(s) 454, 868, 897
SfuI TTCGAA 1 cut(s) 530
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 2 cut(s) 217, 561
Sse9I AATT 7 cut(s) 311, 319, 338, 418, 501, 758, 1141
SsiI CCGC 7 cut(s) 19, 84, 90, 267, 941, 1151, 1214
SspI AATATT 1 cut(s) 711
SspMI CTAG 2 cut(s) 995, 1043
SstI GAGCTC 1 cut(s) 1177
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 1116
TaaI ACNGT 2 cut(s) 246, 455
TaiI ACGT 5 cut(s) 60, 125, 527, 1021, 1223
TaqI TCGA 4 cut(s) 132, 330, 530, 1139
TasI AATT 7 cut(s) 311, 319, 338, 418, 501, 758, 1141
TauI GCSGC 2 cut(s) 86, 269
TfiI GAWTC 3 cut(s) 436, 839, 851
Tru1I TTAA 4 cut(s) 474, 606, 779, 1191
Tru9I TTAA 4 cut(s) 474, 606, 779, 1191
TscAI CASTG 2 cut(s) 454, 877
TseFI GTSAC 3 cut(s) 449, 577, 863
TseI GCWGC 2 cut(s) 1052, 1198
Tsp45I GTSAC 3 cut(s) 449, 577, 863
TspDTI ATGAA 2 cut(s) 391, 831
TspGWI ACGGA 3 cut(s) 142, 230, 375
TspRI CASTG 2 cut(s) 454, 877
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 217, 561
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 3 cut(s) 311, 338, 758
XbaI TCTAGA 1 cut(s) 994
XceI RCATGY 2 cut(s) 617, 1157
XspI CTAG 2 cut(s) 995, 1043
ZraI GACGTC 2 cut(s) 58, 1019
Zsp2I ATGCAT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.