RchiOBHm_Chr1g0371221

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
60534012 .. 60536166
2155 bp
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UTR
Exon/CDS
Intron
PRQ59531

Sequence Viewer

Length: 243 bp
ATGAAGTGGAACCCTTTCATCCTCATGCTACAGCTGAAAGCCATCCTAAAGTCCATTTGGAGAAGGCTTTATCAGATGCCATGTTATATGCCCTCCCTCCGAAAGTTCCCTTTCCTTCAGATTCTGCTTCTGGCTCATTGCCTCATTTCAGTCTCTGTCATCAGGAGGCTCAGATTCTGCTTCTGGCTCATTGATGTTGGTTGGGCTAGTACATGGGTAAAGATTGTCAATGAGTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.71

Weight (kDa)

10.39

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 211
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 157
AlwNI CAGNNNCTG 3 cut(s) 124, 155, 177
Asp700I GAANNNNTTC 1 cut(s) 14
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 136
BseGI GGATG 2 cut(s) 18, 42
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 18, 42
BstMAI GTCTC 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 18, 42
CaiI CAGNNNCTG 3 cut(s) 124, 155, 177
Csp6I GTAC 1 cut(s) 210
CviAII CATG 3 cut(s) 25, 81, 213
CviJI RGCY 7 cut(s) 34, 41, 67, 134, 169, 187, 206
CviKI_1 RGCY 7 cut(s) 34, 41, 67, 134, 169, 187, 206
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 101
FaeI CATG 3 cut(s) 28, 84, 216
FaiI YATR 5 cut(s) 26, 82, 87, 89, 214
FatI CATG 3 cut(s) 24, 80, 212
FokI GGATG 2 cut(s) 5, 29
FspBI CTAG 1 cut(s) 207
Hin1II CATG 3 cut(s) 28, 84, 216
HinfI GANTC 2 cut(s) 121, 174
Hpy188I TCNGA 4 cut(s) 75, 101, 120, 173
Hpy188III TCNNGA 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 57, 125
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 28, 84, 216
LpnPI CCDG 3 cut(s) 116, 148, 169
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 207
MnlI CCTC 5 cut(s) 32, 103, 107, 152, 159
MroXI GAANNNNTTC 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 34
NlaIII CATG 3 cut(s) 28, 84, 216
NlaIV GGNNCC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 121, 174
PspN4I GGNNCC 1 cut(s) 11
PstNI CAGNNNCTG 3 cut(s) 124, 155, 177
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 23
SetI ASST 1 cut(s) 36
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 29
SgeI CNNG 7 cut(s) 37, 93, 143, 175, 196, 219, 225
SmiMI CAYNNNNRTG 1 cut(s) 23
SspMI CTAG 1 cut(s) 207
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 2 cut(s) 121, 174
TspDTI ATGAA 2 cut(s) 7, 17
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.