Rorug06G0481900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018563
Physical Location & Seq
Reverse (-)
60297663 .. 60298292
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0481900.1

Sequence Viewer

Length: 630 bp
ATGGAGCTCGTTCAGGACTTGGTTTGGACCGCCTCGGTGGCCCTGATCCTCTCTTTCTTCGTCGCCAAGCTCGTCGCGATCGCCATGGCGGACCGCGAACCGGAATCGGAGTTCAAGGTCAGTGAGAGTGTCGGCGATGGAGTCGTTATGGAGGAGGTGATATTCGAAGAGAGGCTGAGAGTCGAAGAGGTTTATCAGAGCCAGAGGAGGGTTGAATTCGCCGCAGAAGTGAAGGAGGTTGATCGATTCGAAAGTAAACCGGTTCGTCCGGTCGAGGAAGTCGTCGAATCGGTTCAGCACAGTCAAGGAGGAGAAGAGTCAGCGGCCGTTGAAATTGCAAAGAAATCCGACGACGGCGAGAAGGTGTCGGTTGAGAAAGCGAATGACTCTGATCCTTGTCAACGTGGCCGTGATGAGGAGGATCAGGAAATTTCGGAGAATATACTACGGGAAGAAATTGGTCCGCAATCAGCACCAAACGACGTCGTTACAGCACATTGCAGTGAAGCAAAGGGAAAGATCGAAGCGGTTGAGGTGAAATCGGAAAATTACTACAGCGATGAAGATGACTGGGAAGGGATTGAGAAGAGTGAGCTGGATGAGGGTTATACTGCGGCGGTGAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.32

Weight (kDa)

4.29

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
AccII CGCG 2 cut(s) 77, 96
AciI CCGC 9 cut(s) 30, 89, 94, 222, 323, 464, 527, 614, 617
AclWI GGATC 3 cut(s) 40, 386, 429
AcoI YGGCCR 2 cut(s) 324, 406
AcsI RAATTY 2 cut(s) 215, 429
AcyI GRCGYC 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 100, 208, 415
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 3 cut(s) 115, 215, 332
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 7, 70, 595
AluI AGCT 3 cut(s) 7, 70, 595
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 3 cut(s) 40, 386, 429
AoxI GGCC 3 cut(s) 39, 324, 406
ApoI RAATTY 2 cut(s) 215, 429
AsiGI ACCGGT 1 cut(s) 259
AsiSI GCGATCGC 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 4 cut(s) 27, 40, 91, 461
AsuHPI GGTGA 2 cut(s) 169, 547
AsuII TTCGAA 2 cut(s) 165, 249
AvaII GGWCC 3 cut(s) 27, 91, 461
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 1 cut(s) 131
BceAI ACGGC 3 cut(s) 311, 370, 393
BfmI CTRYAG 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 222, 324, 615
BlsI GCNGC 3 cut(s) 223, 325, 616
Bme18I GGWCC 3 cut(s) 27, 91, 461
BmgT120I GGNCC 4 cut(s) 27, 40, 91, 461
BmrI ACTGGG 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 580
Bpu14I TTCGAA 2 cut(s) 165, 249
Bsa29I ATCGAT 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 33, 84
BsaWI WCCGGW 3 cut(s) 100, 259, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 208, 415
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 496
BseCI ATCGAT 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 33, 84
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 3 cut(s) 100, 208, 415
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 575
BseRI GAGGAG 4 cut(s) 167, 220, 324, 431
BseX3I CGGCCG 1 cut(s) 324
Bsh1236I CGCG 2 cut(s) 77, 96
Bsh1285I CGRYCG 3 cut(s) 81, 273, 327
BshFI GGCC 3 cut(s) 41, 326, 408
BshTI ACCGGT 1 cut(s) 259
BshVI ATCGAT 1 cut(s) 244
BsiEI CGRYCG 3 cut(s) 81, 273, 327
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 3 cut(s) 101, 260, 269
BslI CCNNNNNNNGG 3 cut(s) 100, 208, 415
BsnI GGCC 3 cut(s) 41, 326, 408
Bsp119I TTCGAA 2 cut(s) 165, 249
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 6 cut(s) 45, 78, 241, 391, 421, 519
Bsp19I CCATGG 1 cut(s) 84
Bsp68I TCGCGA 1 cut(s) 77
BspACI CCGC 9 cut(s) 30, 89, 94, 222, 323, 464, 527, 614, 617
BspANI GGCC 3 cut(s) 41, 326, 408
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 244
BspFNI CGCG 2 cut(s) 77, 96
BspPI GGATC 3 cut(s) 40, 386, 429
BspT104I TTCGAA 2 cut(s) 165, 249
BsrDI GCAATG 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 33, 84
BssMI GATC 6 cut(s) 45, 78, 241, 391, 421, 519
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 4 cut(s) 162, 180, 309, 581
BstACI GRCGYC 1 cut(s) 483
BstBI TTCGAA 2 cut(s) 165, 249
BstDEI CTNAG 2 cut(s) 176, 627
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 2 cut(s) 77, 96
BstKTI GATC 6 cut(s) 48, 81, 244, 394, 424, 522
BstMBI GATC 6 cut(s) 45, 78, 241, 391, 421, 519
BstMCI CGRYCG 3 cut(s) 81, 273, 327
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 553
BstUI CGCG 2 cut(s) 77, 96
BstZI CGGCCG 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 244
BsuRI GGCC 3 cut(s) 41, 326, 408
BsuTUI ATCGAT 1 cut(s) 244
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 2 cut(s) 150, 573
BtsCI GGATG 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 127, 508
BtuMI TCGCGA 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 4 cut(s) 27, 40, 91, 461
ClaI ATCGAT 1 cut(s) 244
CpoI CGGWCCG 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 259
CspI CGGWCCG 1 cut(s) 91
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 7, 41, 70, 175, 201, 326, 408, 595
CviKI_1 RGCY 8 cut(s) 7, 41, 70, 175, 201, 326, 408, 595
DdeI CTNAG 2 cut(s) 176, 627
DpnI GATC 6 cut(s) 47, 80, 243, 393, 423, 521
DpnII GATC 6 cut(s) 45, 78, 241, 391, 421, 519
EaeI YGGCCR 2 cut(s) 324, 406
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 4 cut(s) 162, 180, 309, 581
EarI CTCTTC 4 cut(s) 162, 180, 309, 581
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 3 cut(s) 27, 91, 461
Eco52I CGGCCG 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 86, 149, 443, 609
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 222, 324, 615
FokI GGATG 1 cut(s) 611
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 222, 324, 615
GluI GCNGC 3 cut(s) 222, 324, 615
HaeIII GGCC 3 cut(s) 41, 326, 408
HapII CCGG 3 cut(s) 101, 260, 269
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 88
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HinfI GANTC 7 cut(s) 104, 141, 180, 246, 287, 317, 386
HpaII CCGG 3 cut(s) 101, 260, 269
HphI GGTGA 2 cut(s) 169, 547
Hpy166II GTNNAC 2 cut(s) 257, 401
Hpy188I TCNGA 6 cut(s) 109, 198, 349, 391, 436, 544
Hpy188III TCNNGA 3 cut(s) 14, 76, 425
Hpy8I GTNNAC 2 cut(s) 257, 401
Hpy99I CGWCG 7 cut(s) 65, 77, 287, 353, 356, 485, 488
HpyAV CCTTC 3 cut(s) 226, 355, 569
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 2 cut(s) 403, 483
HpyCH4V TGCA 2 cut(s) 338, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 176, 627
HpySE526I ACGT 2 cut(s) 403, 483
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 6 cut(s) 45, 78, 241, 391, 421, 519
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 56, 114, 215, 273, 282, 410, 556, 581
MaeII ACGT 2 cut(s) 403, 483
MaeIII GTNAC 1 cut(s) 487
MalI GATC 6 cut(s) 47, 80, 243, 393, 423, 521
MboI GATC 6 cut(s) 45, 78, 241, 391, 421, 519
MboII GAAGA 7 cut(s) 49, 179, 197, 326, 464, 575, 598
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 5 cut(s) 215, 333, 429, 456, 547
MlyI GAGTC 4 cut(s) 150, 189, 326, 380
MmeI TCCRAC 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 3 cut(s) 101, 260, 269
MvnI CGCG 2 cut(s) 77, 96
MwoI GCNNNNNNNGC 1 cut(s) 38
NcoI CCATGG 1 cut(s) 84
NdeII GATC 6 cut(s) 45, 78, 241, 391, 421, 519
NlaIII CATG 1 cut(s) 88
NruI TCGCGA 1 cut(s) 77
NspV TTCGAA 2 cut(s) 165, 249
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 279
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 104, 246, 287
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 3 cut(s) 223, 325, 616
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 4 cut(s) 149, 188, 325, 380
PpsI GAGTC 4 cut(s) 149, 188, 325, 380
Psp124BI GAGCTC 1 cut(s) 9
PspPI GGNCC 4 cut(s) 27, 40, 91, 461
PvuI CGATCG 1 cut(s) 81
RgaI GCGATCGC 1 cut(s) 81
RruI TCGCGA 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 501
Rsr2I CGGWCCG 1 cut(s) 91
RsrII CGGWCCG 1 cut(s) 91
SacI GAGCTC 1 cut(s) 9
SatI GCNGC 3 cut(s) 222, 324, 615
Sau3AI GATC 6 cut(s) 45, 78, 241, 391, 421, 519
Sau96I GGNCC 4 cut(s) 27, 40, 91, 461
SchI GAGTC 4 cut(s) 150, 189, 326, 380
SduI GDGCHC 1 cut(s) 9
SfaAI GCGATCGC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 553
SfuI TTCGAA 2 cut(s) 165, 249
SgfI GCGATCGC 1 cut(s) 81
SinI GGWCC 3 cut(s) 27, 91, 461
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 5 cut(s) 215, 333, 429, 456, 547
SsiI CCGC 9 cut(s) 30, 89, 94, 222, 323, 464, 527, 614, 617
SstI GAGCTC 1 cut(s) 9
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 2 cut(s) 406, 486
TaqI TCGA 7 cut(s) 165, 183, 244, 249, 273, 285, 522
TasI AATT 5 cut(s) 215, 333, 429, 456, 547
TauI GCSGC 3 cut(s) 224, 326, 617
TfiI GAWTC 3 cut(s) 104, 246, 287
TscAI CASTG 2 cut(s) 127, 508
TspDTI ATGAA 1 cut(s) 576
TspRI CASTG 2 cut(s) 127, 508
VpaK11BI GGWCC 3 cut(s) 27, 91, 461
XapI RAATTY 2 cut(s) 215, 429
XmnI GAANNNNTTC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.