Rmu_sc0002083.1_g000006

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002083.1
OG0018563
Physical Location & Seq
Reverse (-)
30756 .. 31731
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002083.1_g000006.1.cds

Sequence Viewer

Length: 483 bp
atgtttgcttatgatgaagattttaatgctgcaatacccattatattgctttctccttcatttattagttgtcacatgatatgcaaggacaaagatgaagctgaagtctggtttactggtctagaagcattaatatcacacggccttcaacagaagaggagagcagaaacaaaaagtggagttacctctgaagcaaatagtccaagatcacacacgcaaagaagttctcctttgagctctccattttgtagtggtgatagttcacagaaggatgaagtggaaccctttcatcctcatgctacagctgaaagccctcctaaagtccatatggagaaggctttatcagatgccatgttatatgccctccctccgaaagttccctttccttcagattctgcttctagctcatttcagtccctatcatcaggaggctcagattctgcttctggctcattgatgctggccgggctagtacaagggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

160

Amino Acids

17.09

Weight (kDa)

5.24

Isoelectric Point (pI)

73.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 462
AcuI CTGAAG 3 cut(s) 123, 210, 372
AfaI GTAC 1 cut(s) 474
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 4 cut(s) 101, 237, 305, 405
AluI AGCT 4 cut(s) 101, 237, 305, 405
Alw21I GWGCWC 1 cut(s) 239
AlwNI CAGNNNCTG 2 cut(s) 395, 440
AoxI GGCC 2 cut(s) 142, 462
ApeKI GCWGC 1 cut(s) 29
AseI ATTAAT 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 266
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 466
BfaI CTAG 3 cut(s) 122, 402, 470
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 337, 447
BpuMI CCSGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 277, 289
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 144, 464
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 2 cut(s) 144, 464
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 206
BspANI GGCC 2 cut(s) 144, 464
BspCNI CTCAG 1 cut(s) 446
BspLI GGNNCC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 121
BssMI GATC 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 277, 289
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 144, 464
BtsCI GGATG 2 cut(s) 277, 289
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 2 cut(s) 395, 440
Csp6I GTAC 1 cut(s) 473
CviAII CATG 3 cut(s) 76, 296, 352
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 3 cut(s) 123, 210, 372
EcoICRI GAGCTC 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 3 cut(s) 79, 299, 355
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 75, 295, 351
FauNDI CATATG 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 276, 284
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 3 cut(s) 122, 402, 470
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 144, 464
HapII CCGG 1 cut(s) 465
Hin1II CATG 3 cut(s) 79, 299, 355
HinfI GANTC 2 cut(s) 392, 437
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 114, 263
Hpy188I TCNGA 5 cut(s) 190, 346, 372, 391, 436
Hpy188III TCNNGA 2 cut(s) 122, 426
Hpy8I GTNNAC 2 cut(s) 114, 263
HpyAV CCTTC 5 cut(s) 66, 155, 262, 328, 396
HpyCH4V TGCA 2 cut(s) 32, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 1 cut(s) 433
Hsp92II CATG 3 cut(s) 79, 299, 355
Kzo9I GATC 1 cut(s) 206
LpnPI CCDG 6 cut(s) 94, 102, 411, 432, 446, 478
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 337, 447
MaeI CTAG 3 cut(s) 122, 402, 470
MaeIII GTNAC 2 cut(s) 71, 181
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 2 cut(s) 29, 166
MhlI GDGCHC 1 cut(s) 239
MnlI CCTC 7 cut(s) 150, 196, 303, 324, 374, 378, 422
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 2 cut(s) 24, 131
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 466
NciI CCSGG 1 cut(s) 466
NdeI CATATG 1 cut(s) 327
NdeII GATC 1 cut(s) 206
NlaIII CATG 3 cut(s) 79, 299, 355
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 392, 437
PkrI GCNGC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 282
PstNI CAGNNNCTG 2 cut(s) 395, 440
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 24, 131
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 1 cut(s) 239
SetI ASST 5 cut(s) 103, 188, 239, 307, 407
SfaNI GCATC 2 cut(s) 337, 447
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 294
SspMI CTAG 3 cut(s) 122, 402, 470
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 464
TatI WGTACW 1 cut(s) 472
TfiI GAWTC 2 cut(s) 392, 437
Tru1I TTAA 2 cut(s) 24, 131
Tru9I TTAA 2 cut(s) 24, 131
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 5 cut(s) 30, 48, 111, 278, 288
VspI ATTAAT 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 3 cut(s) 122, 402, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.