Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018563

Physical Location & Seq

Genomic Coordinates Reverse (-)

6777713 .. 6793358

Gene Structure 15646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTAGGTCGCCGGTGTGAGGTGCAAGGTTGCTGCTACAAGCCAATCTTTCAAAGGTATCCTCGGCCTGAGAAGGAATATCAGTCATTTTCTCTTATATATGATGACAGGTCTTTAGATTTGGTAAGCATCTTATTTGGTGACTTTGATGCTAATTGCTTATACGAGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTTATTGGTCTAAAAGCATTAATATCATGCGGCCTTCAACAGAAGGGGAGAGCAGAAACAAAAAGTGGAGTTACCTCTGAAGCAAATAGTCCAAGATCACGCACGCAAAGAAGAACTCCTTTGAGCTCTCCATTTTGGAGTGGTGATAGTTCACAGAAGGATGAAGTGGAACCCTTCCATCCTCATGCTACAGCTGAAAGCCCTCCTAAAGTCCATTTTTTGGAGAAGGCTTTATCAGTTGCCATGTTATATGCCCTCCCTCCGAAAGTTCCCTTTCCTTCAGATTCTACTTCTGATGGAATGAATGGTCGAACAAAGGGTGCAGGGACGGATGCTTTTTGGTTAGTTTATCAAGTGCAGTTAGCTCATCAAGTCAAGGCTCTGGTCATGATGACGGTGATGCTTGAGGGGATGTTTTCATTTGGGGGGAAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

212

Amino Acids

23.69

Weight (kDa)

6.89

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0371221
rosa_multiflora	Rmu_co8204492.1_g000001 Rmu_sc0001978.1_g000001 Rmu_sc0002083.1_g000006
rosa_rugosa	Rorug06G0481900 Rorug06G0482000 Rorug06G0482000
rosa_samantha	Rh1AG372400 Rh1BG049000 Rh7BG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	1 cut(s)	231
AcuI	CTGAAG	3 cut(s)	213, 300, 465
AfiI	CCNNNNNNNGG	2 cut(s)	19, 421
AgsI	TTSAA	2 cut(s)	53, 239
AluBI	AGCT	4 cut(s)	191, 327, 395, 566
AluI	AGCT	4 cut(s)	191, 327, 395, 566
Alw21I	GWGCWC	1 cut(s)	329
AoxI	GGCC	2 cut(s)	65, 232
ApeKI	GCWGC	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	152, 356, 610
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	387, 491
BciVI	GTATCC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	34, 232
BlsI	GCNGC	2 cut(s)	35, 233
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	4 cut(s)	138, 139, 523, 591
BpuEI	CTTGAG	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 421
Bse118I	RCCGGY	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	4 cut(s)	367, 379, 538, 618
BseLI	CCNNNNNNNGG	2 cut(s)	19, 421
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	2 cut(s)	543, 578
BshFI	GGCC	2 cut(s)	67, 234
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	19, 421
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	67, 234
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	2 cut(s)	67, 234
BspCNI	CTCAG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	12
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	4 cut(s)	367, 379, 538, 618
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	67, 234
BtsCI	GGATG	4 cut(s)	367, 379, 538, 618
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	588
Cfr10I	RCCGGY	1 cut(s)	12
CviAII	CATG	4 cut(s)	228, 386, 445, 589
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	3 cut(s)	213, 300, 465
EcoICRI	GAGCTC	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	4 cut(s)	231, 389, 448, 592
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 304, 336
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	4 cut(s)	227, 385, 444, 588
Fnu4HI	GCNGC	2 cut(s)	34, 232
FokI	GGATG	4 cut(s)	366, 374, 545, 625
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	34, 232
GluI	GCNGC	2 cut(s)	34, 232
HaeIII	GGCC	2 cut(s)	67, 234
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	4 cut(s)	231, 389, 448, 592
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	152, 356, 610
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	280, 465, 484, 496
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	8 cut(s)	67, 238, 245, 352, 385, 421, 489, 625
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4V	TGCA	4 cut(s)	25, 174, 524, 559
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	231, 389, 448, 592
Kzo9I	GATC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	26, 81, 94, 184, 510, 569
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	4 cut(s)	138, 139, 523, 591
MaeIII	GTNAC	2 cut(s)	140, 271
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	8 cut(s)	13, 72, 286, 393, 414, 467, 471, 601
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	4 cut(s)	231, 389, 448, 592
NlaIV	GGNNCC	1 cut(s)	372
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	35, 233
PshBI	ATTAAT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	34, 232
Sau3AI	GATC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	4 cut(s)	138, 139, 523, 591
SfcI	CTRYAG	1 cut(s)	390
SgrAI	CRCCGGYG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	598
TaqI	TCGA	1 cut(s)	511
TasI	AATT	1 cut(s)	154
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	4 cut(s)	201, 378, 518, 609
TspGWI	ACGGA	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	421
VspI	ATTAAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.