Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018563

Physical Location & Seq

Genomic Coordinates Forward (+)

6493448 .. 6494943

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG088000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTTTGGCCAATCTTCAAAGGTATCCTCGGCCTGAGAAGGAATATAAGTCATTTTCTCTTATATATGATGACAGGTCTTTAGATTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTTACTGGTCTAAAAGCATTAATATCACGCGGCCTTCAACAGAAGGGGAGAGCAGAAACAAAAAGTGGAGTTACCTCTGAAGCAAATAGTCCAAGATCACACATGCAAAGAAGTTCTCCTTTGAGCTCTCCATTTTGTAGTGGTGATAGTTCACAGAAGGATGAAGTGGAACCCTTTCATCCTCATGCTACAGCTGAAAGCCCTCCTAAAGTGCATTTGGAGAAGGCTTTATCAGATGCCATGTTATATGCCCTCCCTCCGAAAGTTCCCTTTCCTTCAGATTCTGCTTCTGGCTCATTTCAGTCTCTGTCATCAGGAGGCTCAGATTCTGCTTCTGGCTCATTGATGTTGGCCGGGCTAGTACATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

164

Amino Acids

17.71

Weight (kDa)

6.2

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0371221
rosa_multiflora	Rmu_co8204492.1_g000001 Rmu_sc0001978.1_g000001 Rmu_sc0002083.1_g000006
rosa_rugosa	Rorug06G0481900 Rorug06G0482000 Rorug06G0482000
rosa_samantha	Rh1AG372400 Rh1BG049000 Rh7BG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	9, 474
AcuI	CTGAAG	3 cut(s)	135, 222, 384
AfaI	GTAC	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	20, 161
AluBI	AGCT	3 cut(s)	113, 249, 317
AluI	AGCT	3 cut(s)	113, 249, 317
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	432
AlwNI	CAGNNNCTG	3 cut(s)	407, 430, 452
AoxI	GGCC	4 cut(s)	9, 32, 154, 474
AseI	ATTAAT	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	297
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	289, 301
BseMII	CTCAG	2 cut(s)	27, 459
BseNI	ACTGG	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	11, 34, 156, 476
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	4 cut(s)	11, 34, 156, 476
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	4 cut(s)	11, 34, 156, 476
BspCNI	CTCAG	2 cut(s)	28, 458
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	36, 445
BstF5I	GGATG	2 cut(s)	289, 301
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	11, 34, 156, 476
BtsCI	GGATG	2 cut(s)	289, 301
CaiI	CAGNNNCTG	3 cut(s)	407, 430, 452
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	4 cut(s)	226, 308, 364, 488
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	2 cut(s)	36, 445
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	9, 474
Ecl136II	GAGCTC	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	3 cut(s)	135, 222, 384
EcoICRI	GAGCTC	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	4 cut(s)	229, 311, 367, 491
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	4 cut(s)	225, 307, 363, 487
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	2 cut(s)	288, 296
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	11, 34, 156, 476
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	4 cut(s)	229, 311, 367, 491
HinfI	GANTC	2 cut(s)	404, 449
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	126, 275
Hpy188I	TCNGA	5 cut(s)	202, 358, 384, 403, 448
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	2 cut(s)	126, 275
HpyAV	CCTTC	6 cut(s)	34, 160, 167, 274, 340, 408
HpyCH4V	TGCA	3 cut(s)	96, 229, 337
HpyF3I	CTNAG	2 cut(s)	36, 445
Hsp92II	CATG	4 cut(s)	229, 311, 367, 491
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	48, 61, 106, 114, 399, 423, 444, 490
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	11
MnlI	CCTC	7 cut(s)	39, 208, 315, 336, 386, 390, 434
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	478
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	229, 311, 367, 491
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	10
NspI	RCATGY	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	404, 449
PkrI	GCNGC	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	294
PstNI	CAGNNNCTG	3 cut(s)	407, 430, 452
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	6 cut(s)	26, 80, 115, 200, 251, 319
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	306
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	476
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	404, 449
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	123, 290, 300
VspI	ATTAAT	1 cut(s)	143
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.