Protein present in Fab1, YOTB, Vac1, and EEA1
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0371221 |
| rosa_multiflora | Rmu_co8204492.1_g000001 Rmu_sc0001978.1_g000001 Rmu_sc0002083.1_g000006 |
| rosa_rugosa | Rorug06G0481900 Rorug06G0482000 Rorug06G0482000 |
| rosa_samantha | Rh1AG372400 Rh1BG049000 Rh7BG088000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 242 |
| AciI | CCGC | 1 cut(s) | 52 |
| AcuI | CTGAAG | 3 cut(s) | 34, 121, 286 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 242 |
| AgsI | TTSAA | 1 cut(s) | 60 |
| AluBI | AGCT | 4 cut(s) | 12, 148, 216, 387 |
| AluI | AGCT | 4 cut(s) | 12, 148, 216, 387 |
| Alw21I | GWGCWC | 1 cut(s) | 150 |
| AoxI | GGCC | 1 cut(s) | 53 |
| AseI | ATTAAT | 1 cut(s) | 42 |
| AsuHPI | GGTGA | 2 cut(s) | 177, 431 |
| BanII | GRGCYC | 1 cut(s) | 150 |
| Bbv12I | GWGCWC | 1 cut(s) | 150 |
| BccI | CCATC | 2 cut(s) | 208, 312 |
| BfmI | CTRYAG | 1 cut(s) | 211 |
| BisI | GCNGC | 1 cut(s) | 53 |
| BlsI | GCNGC | 1 cut(s) | 54 |
| BmiI | GGNNCC | 1 cut(s) | 193 |
| BmsI | GCATC | 2 cut(s) | 344, 412 |
| BpuEI | CTTGAG | 1 cut(s) | 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 242 |
| BseGI | GGATG | 4 cut(s) | 188, 200, 359, 439 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BsgI | GTGCAG | 2 cut(s) | 364, 399 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BsiHKAI | GWGCWC | 1 cut(s) | 150 |
| BslFI | GGGAC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BsmFI | GGGAC | 1 cut(s) | 362 |
| BsnI | GGCC | 1 cut(s) | 55 |
| Bsp1286I | GDGCHC | 1 cut(s) | 150 |
| Bsp143I | GATC | 1 cut(s) | 117 |
| BspACI | CCGC | 1 cut(s) | 52 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspHI | TCATGA | 1 cut(s) | 409 |
| BspLI | GGNNCC | 1 cut(s) | 193 |
| BssMI | GATC | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstF5I | GGATG | 4 cut(s) | 188, 200, 359, 439 |
| BstKTI | GATC | 1 cut(s) | 120 |
| BstMBI | GATC | 1 cut(s) | 117 |
| BstSFI | CTRYAG | 1 cut(s) | 211 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BtsCI | GGATG | 4 cut(s) | 188, 200, 359, 439 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CciI | TCATGA | 1 cut(s) | 409 |
| CviAII | CATG | 4 cut(s) | 49, 207, 266, 410 |
| CviJI | RGCY | 8 cut(s) | 12, 55, 148, 216, 223, 252, 387, 402 |
| CviKI_1 | RGCY | 8 cut(s) | 12, 55, 148, 216, 223, 252, 387, 402 |
| DpnI | GATC | 1 cut(s) | 119 |
| DpnII | GATC | 1 cut(s) | 117 |
| Ecl136II | GAGCTC | 1 cut(s) | 148 |
| Eco24I | GRGCYC | 1 cut(s) | 150 |
| Eco53kI | GAGCTC | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 3 cut(s) | 34, 121, 286 |
| EcoICRI | GAGCTC | 1 cut(s) | 148 |
| EcoT38I | GRGCYC | 1 cut(s) | 150 |
| FaeI | CATG | 4 cut(s) | 52, 210, 269, 413 |
| FaiI | YATR | 6 cut(s) | 50, 208, 267, 272, 274, 411 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 125, 157 |
| FaqI | GGGAC | 1 cut(s) | 362 |
| FatI | CATG | 4 cut(s) | 48, 206, 265, 409 |
| Fnu4HI | GCNGC | 1 cut(s) | 53 |
| FokI | GGATG | 4 cut(s) | 187, 195, 366, 446 |
| FriOI | GRGCYC | 1 cut(s) | 150 |
| Fsp4HI | GCNGC | 1 cut(s) | 53 |
| GluI | GCNGC | 1 cut(s) | 53 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| Hin1II | CATG | 4 cut(s) | 52, 210, 269, 413 |
| HinfI | GANTC | 1 cut(s) | 306 |
| HphI | GGTGA | 2 cut(s) | 177, 431 |
| Hpy166II | GTNNAC | 1 cut(s) | 174 |
| Hpy188I | TCNGA | 4 cut(s) | 101, 286, 305, 317 |
| Hpy188III | TCNNGA | 1 cut(s) | 410 |
| Hpy8I | GTNNAC | 1 cut(s) | 174 |
| HpyAV | CCTTC | 7 cut(s) | 59, 66, 173, 206, 242, 310, 446 |
| HpyCH4III | ACNGT | 1 cut(s) | 419 |
| HpyCH4V | TGCA | 2 cut(s) | 345, 380 |
| Hsp92II | CATG | 4 cut(s) | 52, 210, 269, 413 |
| Kzo9I | GATC | 1 cut(s) | 117 |
| LpnPI | CCDG | 3 cut(s) | 5, 331, 390 |
| LweI | GCATC | 2 cut(s) | 344, 412 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 1 cut(s) | 119 |
| MboI | GATC | 1 cut(s) | 117 |
| MboII | GAAGA | 1 cut(s) | 145 |
| MhlI | GDGCHC | 1 cut(s) | 150 |
| MnlI | CCTC | 6 cut(s) | 107, 214, 235, 288, 292, 422 |
| MseI | TTAA | 1 cut(s) | 42 |
| MslI | CAYNNNNRTG | 1 cut(s) | 205 |
| MspA1I | CMGCKG | 1 cut(s) | 216 |
| NdeII | GATC | 1 cut(s) | 117 |
| NlaIII | CATG | 4 cut(s) | 52, 210, 269, 413 |
| NlaIV | GGNNCC | 1 cut(s) | 193 |
| PagI | TCATGA | 1 cut(s) | 409 |
| PfeI | GAWTC | 1 cut(s) | 306 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 242 |
| PkrI | GCNGC | 1 cut(s) | 54 |
| PshBI | ATTAAT | 1 cut(s) | 42 |
| Psp124BI | GAGCTC | 1 cut(s) | 150 |
| PspN4I | GGNNCC | 1 cut(s) | 193 |
| PvuII | CAGCTG | 1 cut(s) | 216 |
| RseI | CAYNNNNRTG | 1 cut(s) | 205 |
| SacI | GAGCTC | 1 cut(s) | 150 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| SatI | GCNGC | 1 cut(s) | 53 |
| Sau3AI | GATC | 1 cut(s) | 117 |
| SduI | GDGCHC | 1 cut(s) | 150 |
| SetI | ASST | 5 cut(s) | 14, 99, 150, 218, 389 |
| SfaNI | GCATC | 2 cut(s) | 344, 412 |
| SfcI | CTRYAG | 1 cut(s) | 211 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 205 |
| SmlI | CTYRAG | 1 cut(s) | 426 |
| SmoI | CTYRAG | 1 cut(s) | 426 |
| SsiI | CCGC | 1 cut(s) | 52 |
| SstI | GAGCTC | 1 cut(s) | 150 |
| TaaI | ACNGT | 1 cut(s) | 419 |
| TaqI | TCGA | 1 cut(s) | 332 |
| TauI | GCSGC | 1 cut(s) | 55 |
| TfiI | GAWTC | 1 cut(s) | 306 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TspDTI | ATGAA | 4 cut(s) | 22, 199, 339, 430 |
| TspGWI | ACGGA | 1 cut(s) | 366 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 242 |
| VspI | ATTAAT | 1 cut(s) | 42 |