Rmu_sc0001978.1_g000001

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001978.1
OG0018563
Physical Location & Seq
Reverse (-)
3077 .. 6044
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001978.1_g000001.1.cds

Sequence Viewer

Length: 939 bp
atggcttttgcacgtcatgtggattcttcgggcatggaggggaggatctgtgatcgaagaatggagagggaggcgttgccactggtggtgtcgggtagtgatctggagatggaatccctagcttttgtggcgggggctagtgggccagggttgactcgtcctgcgtcagcagggttgtcgaagctggaagggaatcgttcgcccgtggagccggtggttggaggggcggctatggctgtaagtggagcggtggtcgttctggaaaattctgcgggaaaccctaattttgaattagggttgaccgttgagttgattgggacgggtcaacatggccttgggccgggtctgcatgggtttgggcctagtctgcatgggacggggctggggctgcaaggacttgtttatgatggtggggccaatacagcgggccttcctcaatccttgattgctggctggttggcaattttattcacgccaatcttcaaaggtatcctcggcctgagaaggaatacgagtcattctcttatatatgatgacaggtctttagatttgatatgcaaggataaagatgaagctgaagtctggtttactggtcttaaaacattaatatcacacggccttcaacagaaggggagagcagaaacaaaaaatggagttacatttgaagcaaatagtccaagatcacacacgcaaagaagttctcctttgagctctccattttgtagtggtgatagttctcaaaaggatgaagtggaaccctttcatcctcatgctacagctgaaagccatcctaaagtccatttggagaaggctttatcagatgccatgttatatgccctccctccgaaagttccctttccttcagattctgcttctggctcattgcctcatttcagtctctgtcatcaggaggctcagattctgcttctggctcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

312

Amino Acids

32.82

Weight (kDa)

5.94

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 5 cut(s) 131, 227, 248, 272, 425
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 2 cut(s) 597, 846
AfiI CCNNNNNNNGG 2 cut(s) 218, 340
AgsI TTSAA 4 cut(s) 290, 484, 623, 665
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 5 cut(s) 122, 184, 575, 711, 779
AluI AGCT 5 cut(s) 122, 184, 575, 711, 779
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 1 cut(s) 902
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 3 cut(s) 869, 900, 922
AoxI GGCC 8 cut(s) 143, 331, 338, 359, 414, 427, 496, 616
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 265
AseI ATTAAT 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 759
AspS9I GGNCC 5 cut(s) 143, 338, 359, 414, 427
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 740
BanII GRGCYC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 1 cut(s) 375
BccI CCATC 3 cut(s) 103, 401, 795
BceAI ACGGC 1 cut(s) 631
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 500
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 3 cut(s) 119, 138, 363
BfmI CTRYAG 1 cut(s) 774
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 2 cut(s) 228, 389
BlsI GCNGC 2 cut(s) 229, 390
Bme1390I CCNGG 2 cut(s) 147, 342
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 5 cut(s) 143, 338, 359, 414, 427
BmiI GGNNCC 3 cut(s) 210, 415, 756
BmrFI CCNGG 2 cut(s) 147, 342
BmsI GCATC 1 cut(s) 811
BplI GAGNNNNNCTC 2 cut(s) 505, 537
BpmI CTGGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 4 cut(s) 146, 204, 334, 493
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 340
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 87, 595
Bse3DI GCAATG 1 cut(s) 881
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 4 cut(s) 146, 204, 334, 493
BseGI GGATG 3 cut(s) 751, 763, 787
BseLI CCNNNNNNNGG 2 cut(s) 218, 340
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 2 cut(s) 491, 929
BseNI ACTGG 2 cut(s) 87, 595
BseXI GCAGC 1 cut(s) 375
BseYI CCCAGC 1 cut(s) 382
BshFI GGCC 8 cut(s) 145, 333, 340, 361, 416, 429, 498, 618
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 2 cut(s) 212, 341
BslFI GGGAC 2 cut(s) 331, 388
BslI CCNNNNNNNGG 2 cut(s) 218, 340
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 2 cut(s) 331, 388
BsnI GGCC 8 cut(s) 145, 333, 340, 361, 416, 429, 498, 618
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 4 cut(s) 45, 52, 100, 680
BspACI CCGC 5 cut(s) 131, 227, 248, 272, 425
BspANI GGCC 8 cut(s) 145, 333, 340, 361, 416, 429, 498, 618
BspCNI CTCAG 2 cut(s) 492, 928
BspLI GGNNCC 3 cut(s) 210, 415, 756
BspPI GGATC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 2 cut(s) 87, 595
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 4 cut(s) 146, 204, 334, 493
BssMI GATC 4 cut(s) 45, 52, 100, 680
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 427, 451
BstDEI CTNAG 2 cut(s) 500, 915
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 751, 763, 787
BstKTI GATC 4 cut(s) 48, 55, 103, 683
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 4 cut(s) 45, 52, 100, 680
BstMWI GCNNNNNNNGC 7 cut(s) 128, 208, 233, 346, 367, 388, 422
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 340
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 8 cut(s) 145, 333, 340, 361, 416, 429, 498, 618
BtgI CCRYGG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 3 cut(s) 751, 763, 787
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 427, 451
CaiI CAGNNNCTG 3 cut(s) 869, 900, 922
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 5 cut(s) 143, 338, 359, 414, 427
CseI GACGC 1 cut(s) 153
CviAII CATG 7 cut(s) 17, 34, 329, 350, 371, 770, 826
DdeI CTNAG 2 cut(s) 500, 915
DpnI GATC 4 cut(s) 47, 54, 102, 682
DpnII GATC 4 cut(s) 45, 52, 100, 680
Ecl136II GAGCTC 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 2 cut(s) 597, 846
EcoICRI GAGCTC 1 cut(s) 711
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 7 cut(s) 20, 37, 332, 353, 374, 773, 829
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FaqI GGGAC 2 cut(s) 331, 388
FatI CATG 7 cut(s) 16, 33, 328, 349, 370, 769, 825
FauI CCCGC 3 cut(s) 124, 265, 418
Fnu4HI GCNGC 2 cut(s) 228, 389
FokI GGATG 3 cut(s) 750, 758, 774
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 2 cut(s) 228, 389
FspBI CTAG 3 cut(s) 119, 138, 363
GluI GCNGC 2 cut(s) 228, 389
GsaI CCCAGC 1 cut(s) 386
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 8 cut(s) 145, 333, 340, 361, 416, 429, 498, 618
HapII CCGG 2 cut(s) 212, 341
HgaI GACGC 1 cut(s) 153
Hin1II CATG 7 cut(s) 20, 37, 332, 353, 374, 773, 829
HincII GTYRAC 3 cut(s) 153, 300, 326
HindII GTYRAC 3 cut(s) 153, 300, 326
HinfI GANTC 7 cut(s) 23, 113, 154, 193, 514, 866, 919
HpaII CCGG 2 cut(s) 212, 341
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 4 cut(s) 153, 300, 326, 588
Hpy188I TCNGA 4 cut(s) 820, 846, 865, 918
Hpy188III TCNNGA 3 cut(s) 104, 260, 908
Hpy8I GTNNAC 4 cut(s) 153, 300, 326, 588
HpyAV CCTTC 7 cut(s) 182, 440, 498, 622, 629, 802, 870
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 5 cut(s) 11, 349, 370, 391, 558
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 208, 233, 346, 367, 388, 422
HpyF3I CTNAG 2 cut(s) 500, 915
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 7 cut(s) 20, 37, 332, 353, 374, 773, 829
Kzo9I GATC 4 cut(s) 45, 52, 100, 680
LmnI GCTCC 2 cut(s) 208, 245
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 811
MaeI CTAG 3 cut(s) 119, 138, 363
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 655
MalI GATC 4 cut(s) 47, 54, 102, 682
MbiI CCGCTC 1 cut(s) 248
MboI GATC 4 cut(s) 45, 52, 100, 680
MboII GAAGA 3 cut(s) 18, 69, 472
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 713
MluCI AATT 4 cut(s) 265, 283, 290, 462
MlyI GAGTC 2 cut(s) 148, 523
MmeI TCCRAC 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 2 cut(s) 597, 605
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 2 cut(s) 425, 779
MspI CCGG 2 cut(s) 212, 341
MspR9I CCNGG 2 cut(s) 147, 342
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 7 cut(s) 128, 208, 233, 346, 367, 388, 422
NciI CCSGG 1 cut(s) 342
NdeII GATC 4 cut(s) 45, 52, 100, 680
NlaIII CATG 7 cut(s) 20, 37, 332, 353, 374, 773, 829
NlaIV GGNNCC 3 cut(s) 210, 415, 756
NmeAIII GCCGAG 1 cut(s) 474
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 5 cut(s) 23, 113, 193, 866, 919
PkrI GCNGC 2 cut(s) 229, 390
PleI GAGTC 2 cut(s) 148, 522
PpsI GAGTC 2 cut(s) 148, 522
PshBI ATTAAT 1 cut(s) 605
Psp124BI GAGCTC 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 382
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 210, 415, 756
PspPI GGNCC 5 cut(s) 143, 338, 359, 414, 427
PstNI CAGNNNCTG 3 cut(s) 869, 900, 922
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 779
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 1 cut(s) 713
SaqAI TTAA 2 cut(s) 597, 605
SatI GCNGC 2 cut(s) 228, 389
Sau3AI GATC 4 cut(s) 45, 52, 100, 680
Sau96I GGNCC 5 cut(s) 143, 338, 359, 414, 427
SchI GAGTC 2 cut(s) 148, 523
ScrFI CCNGG 2 cut(s) 147, 342
SduI GDGCHC 1 cut(s) 713
SetI ASST 8 cut(s) 16, 124, 186, 490, 542, 577, 713, 781
SfaNI GCATC 1 cut(s) 811
SfcI CTRYAG 1 cut(s) 774
SmiMI CAYNNNNRTG 1 cut(s) 768
Sse9I AATT 4 cut(s) 265, 283, 290, 462
SsiI CCGC 5 cut(s) 131, 227, 248, 272, 425
SspMI CTAG 3 cut(s) 119, 138, 363
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 145, 340
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 55, 179
TasI AATT 4 cut(s) 265, 283, 290, 462
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 5 cut(s) 23, 113, 193, 866, 919
Tru1I TTAA 2 cut(s) 597, 605
Tru9I TTAA 2 cut(s) 597, 605
TscAI CASTG 1 cut(s) 87
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 585, 752, 762
TspRI CASTG 1 cut(s) 87
VspI ATTAAT 1 cut(s) 605
XapI RAATTY 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 3 cut(s) 119, 138, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.