RchiOBHm_Chr2g0092781

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017423
Physical Location & Seq
Reverse (-)
6145074 .. 6146726
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46786

Sequence Viewer

Length: 513 bp
ATGTGTGAGGTATTGAAACCCAAAGCTCATCTCTGCCATTCTCGTTCAACCTTCTCTGTTCTTTCTTTCATAAAAAAAAAAAAAAACAAAACCTTCTCTGTTCTTTCAAGATATATGGCTACACCAAGTACATTAACCTACAGCGATTACGTGGACCAACATTTAATGAAAGAAAACGTCCTCAGCGAGGCAGCAATTGCAGGACACCGAGGCGAAATTTGGGCCCAGACCAGTGGGTTCCCTAGATTTCCTGATGCGGAAATTCGGAACATCATGCAAGAATTCGATAAACCTGGGACGCACAGGGTGTTGTCCTGTGGAGGGACTGACCATGTGGTAGTCCAATCCATTCCTCGTATTTTAATTCGCACACAGCTGCCGGGCACTGATGGAGGCGTTATAATAATGAAGACCATACAACTGCTGCTTATAGGGACCTATAATAGCAACCCTACCCGGTCCAGCACTATTGTTGAAGATTTGGGCAATTTTTTCGTATGCAATGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

170

Amino Acids

18.93

Weight (kDa)

9.14

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 47 - 167 2.6e-18 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AciI CCGC 1 cut(s) 257
AcsI RAATTY 3 cut(s) 216, 261, 281
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 187, 321
AgsI TTSAA 4 cut(s) 16, 48, 108, 476
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 26, 376
AluI AGCT 2 cut(s) 26, 376
AoxI GGCC 1 cut(s) 222
ApaI GGGCCC 1 cut(s) 226
ApeKI GCWGC 3 cut(s) 191, 376, 424
ApoI RAATTY 3 cut(s) 216, 261, 281
AspS9I GGNCC 5 cut(s) 154, 222, 223, 435, 459
AsuC2I CCSGG 2 cut(s) 381, 457
AvaII GGWCC 3 cut(s) 154, 435, 459
BaeGI GKGCMC 2 cut(s) 226, 386
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 182
BbvI GCAGC 3 cut(s) 203, 363, 411
BccI CCATC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 1 cut(s) 294
BcnI CCSGG 2 cut(s) 381, 457
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 3 cut(s) 192, 377, 425
BlsI GCNGC 3 cut(s) 193, 378, 426
Bme1390I CCNGG 3 cut(s) 294, 381, 457
Bme18I GGWCC 3 cut(s) 154, 435, 459
BmgT120I GGNCC 5 cut(s) 154, 222, 223, 435, 459
BmiI GGNNCC 3 cut(s) 224, 239, 436
BmrFI CCNGG 3 cut(s) 294, 381, 457
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 182
BpuMI CCSGG 2 cut(s) 381, 457
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 208, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 321
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 208, 293
BseLI CCNNNNNNNGG 2 cut(s) 187, 321
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 2 cut(s) 226, 386
BseXI GCAGC 3 cut(s) 203, 363, 411
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 380, 457
BslFI GGGAC 3 cut(s) 310, 337, 448
BslI CCNNNNNNNGG 2 cut(s) 187, 321
BsmFI GGGAC 3 cut(s) 310, 337, 448
BsnI GGCC 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 226, 386
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 224, 239, 436
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 208, 293
Bst2UI CCWGG 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 3 cut(s) 292, 379, 455
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 2 cut(s) 226, 386
BstV1I GCAGC 3 cut(s) 203, 363, 411
BstV2I GAAGAC 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 238, 384
Cfr13I GGNCC 5 cut(s) 154, 222, 223, 435, 459
CseI GACGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 274, 332
CviJI RGCY 4 cut(s) 26, 119, 224, 376
CviKI_1 RGCY 4 cut(s) 26, 119, 224, 376
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 182
DraIII CACNNNGTG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 154, 435, 459
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 2 cut(s) 277, 335
FaqI GGGAC 3 cut(s) 310, 337, 448
FatI CATG 2 cut(s) 273, 331
Fnu4HI GCNGC 3 cut(s) 192, 377, 425
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 192, 377, 425
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 192, 377, 425
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 380, 457
HgaI GACGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 277, 335
HpaII CCGG 2 cut(s) 380, 457
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 108, 251
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 61, 103
HpyCH4IV ACGT 2 cut(s) 150, 177
HpyCH4V TGCA 3 cut(s) 200, 277, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 2 cut(s) 150, 177
Hsp92II CATG 2 cut(s) 277, 335
Lsp1109I GCAGC 3 cut(s) 203, 363, 411
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 243
MaeII ACGT 2 cut(s) 150, 177
MboII GAAGA 2 cut(s) 421, 488
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 226, 386
MluCI AATT 6 cut(s) 195, 216, 261, 281, 363, 487
MnlI CCTC 6 cut(s) 181, 191, 203, 314, 363, 386
MseI TTAA 4 cut(s) 134, 164, 362, 511
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 2 cut(s) 380, 457
MspR9I CCNGG 3 cut(s) 294, 381, 457
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 2 cut(s) 381, 457
NlaIII CATG 2 cut(s) 277, 335
NlaIV GGNNCC 3 cut(s) 224, 239, 436
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PkrI GCNGC 3 cut(s) 193, 378, 426
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 435
PsiI TTATAA 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 224, 239, 436
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 5 cut(s) 154, 222, 223, 435, 459
PspPPI RGGWCCY 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 376
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 4 cut(s) 134, 164, 362, 511
SatI GCNGC 3 cut(s) 192, 377, 425
Sau96I GGNCC 5 cut(s) 154, 222, 223, 435, 459
ScrFI CCNGG 3 cut(s) 294, 381, 457
SduI GDGCHC 2 cut(s) 226, 386
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 3 cut(s) 154, 435, 459
Sse9I AATT 6 cut(s) 195, 216, 261, 281, 363, 487
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 3 cut(s) 292, 379, 455
TaiI ACGT 2 cut(s) 153, 180
TaqI TCGA 1 cut(s) 285
TasI AATT 6 cut(s) 195, 216, 261, 281, 363, 487
TatI WGTACW 1 cut(s) 128
Tru1I TTAA 4 cut(s) 134, 164, 362, 511
Tru9I TTAA 4 cut(s) 134, 164, 362, 511
TscAI CASTG 2 cut(s) 238, 391
TseI GCWGC 3 cut(s) 191, 376, 424
TspDTI ATGAA 3 cut(s) 58, 182, 422
TspRI CASTG 2 cut(s) 238, 391
VpaK11BI GGWCC 3 cut(s) 154, 435, 459
XagI CCTNNNNNAGG 1 cut(s) 185
XapI RAATTY 3 cut(s) 216, 261, 281
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.