Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017423

Physical Location & Seq

Genomic Coordinates Reverse (-)

4251839 .. 4252464

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCATTTAACTTCAACAGTCACTTGGAAGAGGACTTAATGGGCAATGAACTGCTCAGATGCGGTGCAATATTTCAGGAAGGTGAAATAACTGCCATCATGAACGAATTCGAGCGACCTGGAACTCATGCCACCTTATTCATTGGAGGGACAAGCTACAACGTGGTCCAAGGTATTGACGGTTCTGTCATTCGTGCAAGGCTGGAGGGGGCGAATAATGATACTGGAATAACCATAATGAAGACGAGGGCTGCCCTCGTGGTTGGGATCTATGATAGATCTCCTGTTGAGTGCAGCACTATAGTCGAAAGTTTGGGAAATCACTTCATAGCTTACCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

4.73

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	26 - 111	3.3e-11	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092781 RchiOBHm_Chr2g0092851
rosa_laevigata	RLG00000016177
rosa_roxburghii	Rroxscaffold_2G00148840
rosa_rugosa	Rorug02G0012800
rosa_samantha	Rh2AG059000 Rh2BG057100 Rh2BG057500 Rh2BG076000 Rh2BG076600 Rh2CG059400 Rh2CG078100 Rh2CG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	2 cut(s)	156, 332
AluI	AGCT	2 cut(s)	156, 332
AlwI	GGATC	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	251, 294
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	238, 306
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	300
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	2 cut(s)	252, 295
BlsI	GCNGC	2 cut(s)	253, 296
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	238, 306
BsgI	GTGCAG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	267, 278
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	99
BspPI	GGATC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	267, 278
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	20, 182
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	270, 281
BstMBI	GATC	2 cut(s)	267, 278
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	238, 306
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	267, 278
BstYI	RGATCY	2 cut(s)	267, 278
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	2 cut(s)	100, 128
CviJI	RGCY	4 cut(s)	156, 202, 251, 332
CviKI_1	RGCY	4 cut(s)	156, 202, 251, 332
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	269, 280
DpnII	GATC	2 cut(s)	267, 278
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	103, 131
FaiI	YATR	6 cut(s)	101, 129, 236, 273, 302, 329
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	99, 127
Fnu4HI	GCNGC	2 cut(s)	252, 295
Fsp4HI	GCNGC	2 cut(s)	252, 295
GluI	GCNGC	2 cut(s)	252, 295
GsuI	CTGGAG	1 cut(s)	224
Hin1II	CATG	2 cut(s)	103, 131
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	77, 100
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	20, 182
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	68, 197, 294
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	103, 131
Kzo9I	GATC	2 cut(s)	267, 278
LpnPI	CCDG	6 cut(s)	62, 105, 132, 188, 210, 297
Lsp1109I	GCAGC	2 cut(s)	238, 306
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	269, 280
MboI	GATC	2 cut(s)	267, 278
MboII	GAAGA	2 cut(s)	41, 253
MflI	RGATCY	2 cut(s)	267, 278
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	5 cut(s)	25, 140, 199, 240, 266
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	3 cut(s)	9, 38, 343
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	267, 278
NlaIII	CATG	2 cut(s)	103, 131
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	253, 296
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	166
PsrI	GAACNNNNNNTAC	2 cut(s)	166, 198
PsuI	RGATCY	2 cut(s)	267, 278
SaqAI	TTAA	3 cut(s)	9, 38, 343
SatI	GCNGC	2 cut(s)	252, 295
Sau3AI	GATC	2 cut(s)	267, 278
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	7 cut(s)	85, 121, 137, 158, 165, 175, 334
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	63
SspI	AATATT	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	20, 182
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	111, 306
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	9, 38, 343
Tru9I	TTAA	3 cut(s)	9, 38, 343
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	251, 294
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	63, 116, 130, 254, 316
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.