Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017423

Physical Location & Seq

Genomic Coordinates Forward (+)

4484338 .. 4486004

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGCAATGAACTGCTCAGATGTGGTGCAATAGCATCCCACGAAGGAAACACATGGGCCGCAATCGAAAACTTCCCTCTATTTCAGGAAGGTGAAATAACTGCCATCATGAACGAATTCGAGCGACCTGGAACTCATGGCACCTTATTCATTGGAGGGACTAGCTACAACGTGGTCCAAGGTATTGACGGTTCTGTCATTCGTGCAAGGCTGGACGGGGCGAATAATGATACTGGAATAACCATAATGAAGACAAGGGCTGCCCTCATGATTGGGATCTATGATAGATCTCCTGTTGAGTGCAGCACTATCGTCGAAAGTTTGGGAAATCACTTCACAGATTGCCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0007097 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010639 GO:0016043 GO:0016049 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030837 GO:0030845 GO:0031333 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0035091 GO:0040007 GO:0042989 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0044706 GO:0045185 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051235 GO:0051493 GO:0051494 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051651 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0065008 GO:0070064 GO:0070727 GO:0071840 GO:0090066 GO:0110053 GO:1901981 GO:1902903 GO:1902904 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

118

Amino Acids

12.63

Weight (kDa)

4.71

Isoelectric Point (pI)

20.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	4 - 114	5.1e-16	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092781 RchiOBHm_Chr2g0092851
rosa_laevigata	RLG00000016177
rosa_roxburghii	Rroxscaffold_2G00148840
rosa_rugosa	Rorug02G0012800
rosa_samantha	Rh2AG059000 Rh2BG057100 Rh2BG057500 Rh2BG076000 Rh2BG076600 Rh2CG059400 Rh2CG078100 Rh2CG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	260, 303
ApoI	RAATTY	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	57, 175
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	247, 315
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	4 cut(s)	292, 295, 326, 329
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	3 cut(s)	60, 261, 304
BlsI	GCNGC	3 cut(s)	61, 262, 305
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	57, 175
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	247, 315
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	276, 287
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	30
BspHI	TCATGA	2 cut(s)	108, 267
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	276, 287
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	279, 290
BstMBI	GATC	2 cut(s)	276, 287
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	247, 315
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	276, 287
BstYI	RGATCY	2 cut(s)	276, 287
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	35
CciI	TCATGA	2 cut(s)	108, 267
Cfr13I	GGNCC	2 cut(s)	57, 175
CviAII	CATG	4 cut(s)	54, 109, 137, 268
CviJI	RGCY	4 cut(s)	59, 165, 211, 260
CviKI_1	RGCY	4 cut(s)	59, 165, 211, 260
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	2 cut(s)	278, 289
DpnII	GATC	2 cut(s)	276, 287
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	57, 112, 140, 271
FaiI	YATR	6 cut(s)	55, 110, 138, 245, 269, 282
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	4 cut(s)	53, 108, 136, 267
Fnu4HI	GCNGC	3 cut(s)	60, 261, 304
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	60, 261, 304
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	60, 261, 304
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	57, 112, 140, 271
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	86, 109, 268
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	38, 83
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	29, 206, 303
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	57, 112, 140, 271
Kzo9I	GATC	2 cut(s)	276, 287
LpnPI	CCDG	6 cut(s)	71, 114, 141, 197, 219, 306
Lsp1109I	GCAGC	2 cut(s)	247, 315
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	171
MalI	GATC	2 cut(s)	278, 289
MboI	GATC	2 cut(s)	276, 287
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	2 cut(s)	276, 287
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	3 cut(s)	87, 149, 275
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	276, 287
NlaIII	CATG	4 cut(s)	57, 112, 140, 271
NlaIV	GGNNCC	1 cut(s)	142
PagI	TCATGA	2 cut(s)	108, 267
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	61, 262, 305
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	57, 175
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PsuI	RGATCY	2 cut(s)	276, 287
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	3 cut(s)	60, 261, 304
Sau3AI	GATC	2 cut(s)	276, 287
Sau96I	GGNCC	2 cut(s)	57, 175
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	6 cut(s)	94, 130, 146, 167, 174, 184
SfaNI	GCATC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	66, 120, 315
TasI	AATT	1 cut(s)	116
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TseI	GCWGC	2 cut(s)	260, 303
TspDTI	ATGAA	4 cut(s)	24, 125, 139, 263
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.