Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017423

Physical Location & Seq

Genomic Coordinates Reverse (-)

4753284 .. 4754007

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGCCGCAAGCGAAAACTTCCCTCTAGTTTATTTCAGGAAGGTGAAATAACTGCCATCATGAACGAATTCGAGCGACCCGGAACTCATGCCACCTTATTCATTGGAGGAACTAGGTACAACGTGGTCCAAGGTATTGACGGTTCTGTCATTCGTGCAAGGCTGGAGGGGGCGAATAATGATACTGGAATAACCATAATGAAGACGAGGGCTGCCCTCGTGGTTGGGATCTATGATAGATCTCCTGTTGAGTGCAGCACTATCGTCGAAAGTTTGGGAAATCACTTCATAGCTTACCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

101

Amino Acids

11.07

Weight (kDa)

7.93

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	13 - 98	9.6e-12	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0092781 RchiOBHm_Chr2g0092851
rosa_laevigata	RLG00000016177
rosa_roxburghii	Rroxscaffold_2G00148840
rosa_rugosa	Rorug02G0012800
rosa_samantha	Rh2AG059000 Rh2BG057100 Rh2BG057500 Rh2BG076000 Rh2BG076600 Rh2CG059400 Rh2CG078100 Rh2CG078700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	1 cut(s)	119
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	212, 255
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	4, 127
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	199, 267
BccI	CCATC	1 cut(s)	65
BcgI	CGANNNNNNTGC	4 cut(s)	244, 247, 278, 281
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	2 cut(s)	27, 114
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	3 cut(s)	7, 213, 256
BlsI	GCNGC	3 cut(s)	8, 214, 257
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	4, 127
BmrFI	CCNGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	199, 267
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	81
BsnI	GGCC	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	228, 239
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	60
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	228, 239
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	231, 242
BstMBI	GATC	2 cut(s)	228, 239
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	199, 267
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	228, 239
BstYI	RGATCY	2 cut(s)	228, 239
BsuRI	GGCC	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	4, 127
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	61, 89
CviJI	RGCY	4 cut(s)	6, 163, 212, 293
CviKI_1	RGCY	4 cut(s)	6, 163, 212, 293
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	2 cut(s)	230, 241
DpnII	GATC	2 cut(s)	228, 239
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	2 cut(s)	64, 92
FaiI	YATR	5 cut(s)	62, 90, 197, 234, 290
FatI	CATG	2 cut(s)	60, 88
Fnu4HI	GCNGC	3 cut(s)	7, 213, 256
Fsp4HI	GCNGC	3 cut(s)	7, 213, 256
FspBI	CTAG	2 cut(s)	27, 114
GluI	GCNGC	3 cut(s)	7, 213, 256
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	64, 92
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	38, 61
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	158, 255
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	64, 92
Kzo9I	GATC	2 cut(s)	228, 239
LpnPI	CCDG	5 cut(s)	23, 94, 149, 171, 258
Lsp1109I	GCAGC	2 cut(s)	199, 267
MaeI	CTAG	2 cut(s)	27, 114
MaeII	ACGT	1 cut(s)	123
MalI	GATC	2 cut(s)	230, 241
MboI	GATC	2 cut(s)	228, 239
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	2 cut(s)	228, 239
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	5 cut(s)	34, 101, 160, 201, 227
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	1 cut(s)	304
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	81
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	228, 239
NlaIII	CATG	2 cut(s)	64, 92
PagI	TCATGA	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	8, 214, 257
PspPI	GGNCC	2 cut(s)	4, 127
PsrI	GAACNNNNNNTAC	2 cut(s)	127, 159
PsuI	RGATCY	2 cut(s)	228, 239
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	304
SatI	GCNGC	3 cut(s)	7, 213, 256
Sau3AI	GATC	2 cut(s)	228, 239
Sau96I	GGNCC	2 cut(s)	4, 127
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	6 cut(s)	46, 98, 119, 126, 136, 295
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	27, 114
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	72, 267
TasI	AATT	1 cut(s)	68
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TseI	GCWGC	2 cut(s)	212, 255
TspDTI	ATGAA	4 cut(s)	77, 91, 215, 277
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	27, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.