Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019356

Physical Location & Seq

Genomic Coordinates Reverse (-)

8820498 .. 8821327

Gene Structure 830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTATCTCAGTGATTTTGATGCTAATTGGATGGTGTTCACAAACTGCAGGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATGAGGACAGATTCTGCCTTGAAGTTTGGTGGTGGCATTCTTGCTGCAATTGATGTCTTTCCTAACCATGCGGTGGTAGGGGTAAGTTTGGTGGTAATGCCTGCAGCCTTCATCTGTCTTTTAAAGCTTTTTTTAAAGGTAAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

95

Amino Acids

10.78

Weight (kDa)

8.68

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	16 - 55	4e-12	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019356)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha	Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana	Rw3G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	3 cut(s)	132, 133, 211
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	182, 242
AspS9I	GGNCC	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	169, 254
BccI	CCATC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	286
BfmI	CTRYAG	2 cut(s)	46, 240
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	183, 243
BlsI	GCNGC	2 cut(s)	184, 244
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	53, 125
BmsI	GCATC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 133, 211
Bse3DI	GCAATG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	132, 133, 211
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	169, 254
BslI	CCNNNNNNNGG	3 cut(s)	132, 133, 211
BsmI	GAATGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	53, 125
BspMAI	CTGCAG	2 cut(s)	50, 244
BspMI	ACCTGC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	36
BstSFI	CTRYAG	2 cut(s)	46, 240
BstV1I	GCAGC	2 cut(s)	169, 254
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	2 cut(s)	245, 265
CviKI_1	RGCY	2 cut(s)	245, 265
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	8
DraI	TTTAAA	2 cut(s)	261, 273
Eco47I	GGWCC	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	123
FaeI	CATG	1 cut(s)	209
FaiI	YATR	4 cut(s)	81, 106, 108, 207
FatI	CATG	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	183, 243
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	183, 243
FspBI	CTAG	1 cut(s)	286
GluI	GCNGC	2 cut(s)	183, 243
Hin1II	CATG	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	48, 71, 185, 242
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	209
LpnPI	CCDG	3 cut(s)	34, 106, 252
Lsp1109I	GCAGC	2 cut(s)	169, 254
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	286
MfeI	CAATTG	1 cut(s)	186
MluCI	AATT	2 cut(s)	25, 186
MnlI	CCTC	1 cut(s)	135
MseI	TTAA	2 cut(s)	260, 272
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	174
NdeI	CATATG	1 cut(s)	106
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	53, 125
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	184, 244
PpuMI	RGGWCCY	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	53, 125
PspPI	GGNCC	1 cut(s)	123
PspPPI	RGGWCCY	1 cut(s)	123
PstI	CTGCAG	2 cut(s)	50, 244
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	260, 272
SatI	GCNGC	2 cut(s)	183, 243
Sau96I	GGNCC	1 cut(s)	123
SetI	ASST	3 cut(s)	53, 267, 279
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	2 cut(s)	46, 240
SgeI	CNNG	9 cut(s)	61, 80, 101, 133, 146, 169, 191, 218, 251
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	25, 186
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	286
TasI	AATT	2 cut(s)	25, 186
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	260, 272
Tru9I	TTAA	2 cut(s)	260, 272
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	182, 242
TspDTI	ATGAA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	123
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.