Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019356

Physical Location & Seq

Genomic Coordinates Reverse (-)

80137722 .. 80138792

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG566200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCAATCATTTTCCATGTATCTCAGTGATTTTGATGCTAATTGGATGGTGTTCACAAACTGCAGGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATGAGGACAGATTCTGCCTTGAAGTTTGGTTGGTGTTTCCTGTTTTACATGGGCATTCTTGCTGCAATTGATGTCTTTCCTGACCATGCGGTGGTAGGGGGTATTAAGTTTTTAAAACGTAATATCAGCATCGTTCAATTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

99

Amino Acids

11.63

Weight (kDa)

9.06

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	21 - 71	4.9e-14	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019356)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha	Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana	Rw3G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	244
AciI	CCGC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	147, 148, 244
AgsI	TTSAA	2 cut(s)	175, 290
AlwNI	CAGNNNCTG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	68, 140
BmsI	GCATC	2 cut(s)	25, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 148, 244
Bse3DI	GCAATG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	147, 148, 244
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	147, 148, 244
BsmI	GAATGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	68, 140
BspMAI	CTGCAG	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	16, 202, 239
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	23
DraI	TTTAAA	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	138
FaeI	CATG	3 cut(s)	19, 205, 242
FaiI	YATR	6 cut(s)	17, 96, 121, 123, 203, 240
FatI	CATG	3 cut(s)	15, 201, 238
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	19, 205, 242
HinfI	GANTC	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	4, 63, 86, 218
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	19, 205, 242
LpnPI	CCDG	4 cut(s)	49, 121, 206, 246
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	25, 291
MaeII	ACGT	1 cut(s)	271
MfeI	CAATTG	2 cut(s)	219, 290
MluCI	AATT	3 cut(s)	40, 219, 290
MnlI	CCTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	258, 266
MunI	CAATTG	2 cut(s)	219, 290
Mva1269I	GAATGC	1 cut(s)	207
NdeI	CATATG	1 cut(s)	121
NlaIII	CATG	3 cut(s)	19, 205, 242
NlaIV	GGNNCC	2 cut(s)	68, 140
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	68, 140
PspPI	GGNCC	1 cut(s)	138
PspPPI	RGGWCCY	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	258, 266
SatI	GCNGC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	138
SetI	ASST	2 cut(s)	68, 274
SfaNI	GCATC	2 cut(s)	25, 291
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	138
Sse9I	AATT	3 cut(s)	40, 219, 290
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	274
TasI	AATT	3 cut(s)	40, 219, 290
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	258, 266
Tru9I	TTAA	2 cut(s)	258, 266
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	1 cut(s)	215
TspRI	CASTG	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.