Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019356

Physical Location & Seq

Genomic Coordinates Forward (+)

13497836 .. 13512481

Gene Structure 14646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG156200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAAAGGCCGGAGCAGTCGGCCGGCGAAGGAGATTTCTTCTTGAGGAGATTGAGACACTGCAAGTCTTGCTCCTGCAATTTTAGAGGATTTGTACCACCTCATCAAGAAGACAATATCAGACAAAGAGAGGATTCTGTTGTAAAAGCTGGTGTCCCCAATGATGGAAAAGATTGGCCTCCATTCTTTCGAATTATTCACCATGATATTACCAATGAAATTCATGTACAGTCTCAAAGGCTACAATTCTGGAAGAGAGTAATTAGGGGTCATGTTTCACGGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATGAGGACAGATTCTGCCTTGAAGTTTGGTTGGTGTTTCCTGTTTTACATGGGCATTCTTGCTGCAATTGATGTCTTTCCTGACCATGCGGTGGTAGGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

157

Amino Acids

18.46

Weight (kDa)

9.38

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	93 - 143	3e-14	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019356)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha	Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana	Rw3G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	460
AciI	CCGC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	3 cut(s)	96, 228, 350
AfiI	CCNNNNNNNGG	4 cut(s)	164, 363, 364, 460
AgsI	TTSAA	1 cut(s)	391
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	2 cut(s)	49, 237
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	8, 21, 176
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	49, 237
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	2 cut(s)	284, 356
BpiI	GAAGAC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 363, 364, 460
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	4 cut(s)	164, 363, 364, 460
BseMI	GCAATG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	418
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	10, 23, 178
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	11, 24
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	164, 363, 364, 460
BsmAI	GTCTC	2 cut(s)	49, 237
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	10, 23, 178
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	226
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	3 cut(s)	10, 23, 178
BspLI	GGNNCC	2 cut(s)	284, 356
BspT104I	TTCGAA	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	231, 282
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	49, 237
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	117
BstZI	CGGCCG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	10, 23, 178
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	95, 227, 349
CviAII	CATG	5 cut(s)	203, 224, 272, 418, 455
CviJI	RGCY	5 cut(s)	10, 23, 149, 178, 241
CviKI_1	RGCY	5 cut(s)	10, 23, 149, 178, 241
CviQI	GTAC	3 cut(s)	95, 227, 349
EaeI	YGGCCR	1 cut(s)	21
EagI	CGGCCG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	354
Eco52I	CGGCCG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	354
FaeI	CATG	5 cut(s)	206, 227, 275, 421, 458
FaiI	YATR	8 cut(s)	204, 225, 273, 312, 337, 339, 419, 456
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	202, 223, 271, 417, 454
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	10, 23, 178
HapII	CCGG	2 cut(s)	11, 24
Hin1II	CATG	5 cut(s)	206, 227, 275, 421, 458
HinfI	GANTC	2 cut(s)	134, 380
HpaII	CCGG	2 cut(s)	11, 24
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	4 cut(s)	43, 107, 250, 449
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	231, 282
HpyCH4V	TGCA	4 cut(s)	63, 78, 302, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	206, 227, 275, 421, 458
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	13, 77
LpnPI	CCDG	8 cut(s)	24, 37, 88, 135, 235, 337, 422, 462
Lsp1109I	GCAGC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	31, 122, 265
MfeI	CAATTG	1 cut(s)	435
MluCI	AATT	6 cut(s)	79, 192, 219, 245, 261, 435
MnlI	CCTC	6 cut(s)	39, 80, 111, 124, 189, 366
MroNI	GCCGGC	1 cut(s)	23
MspI	CCGG	2 cut(s)	11, 24
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	69
NaeI	GCCGGC	1 cut(s)	25
NdeI	CATATG	1 cut(s)	337
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	5 cut(s)	206, 227, 275, 421, 458
NlaIV	GGNNCC	2 cut(s)	284, 356
NspV	TTCGAA	1 cut(s)	190
PctI	GAATGC	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	134, 380
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	284, 356
PspPI	GGNCC	1 cut(s)	354
PspPPI	RGGWCCY	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	96, 228, 350
RsaNI	GTAC	3 cut(s)	95, 227, 349
SatI	GCNGC	1 cut(s)	432
Sau96I	GGNCC	1 cut(s)	354
SetI	ASST	2 cut(s)	103, 151
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	6 cut(s)	79, 192, 219, 245, 261, 435
SsiI	CCGC	1 cut(s)	458
SspI	AATATT	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	231, 282
TaqI	TCGA	1 cut(s)	190
TasI	AATT	6 cut(s)	79, 192, 219, 245, 261, 435
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	134, 380
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	3 cut(s)	17, 212, 231
TspRI	CASTG	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.