RchiOBHm_Chr2g0134221

Secretory carrier-associated membrane protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
51221705 .. 51223787
2083 bp
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UTR
Exon/CDS
Intron
PRQ50526

Sequence Viewer

Length: 351 bp
ATGATGTTCATGTCGTATCTCCTCGGAATTATTTTGCATTCGCCCCTTTACGACCAAGTGTTACCTGTGGAACTGTGGAGCCTTTGGAGCATTGTTGAACCAATTCGTAACATAGTCAGAAAGTATTTGTGGCCTTTGCCTTTTGCAAATGAGTTTAAAGTGTATAAATGTTGCATTGCTTCTACTGACTGTTGCATTCCAACTTGCAGGACAGATTCTGCCTTGAAGTTTGGTTGGTGTTTCCTGTTTTACATGGGCATTCTTGCTGCAATTGATGTCTTTCCTGACCATGCGGTGGTAGGGGGTATTAAGTTTTTAAAACGTAATATCAGCATCGTTCATTTGTTTTAG

Protein Analysis

116

Amino Acids

13.42

Weight (kDa)

8.24

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019356)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 295
AciI CCGC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 2 cut(s) 98, 226
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 253
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 295
BsmI GAATGC 3 cut(s) 37, 195, 258
BsnI GGCC 1 cut(s) 133
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 75, 191
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 218
CviAII CATG 3 cut(s) 10, 253, 290
CviJI RGCY 2 cut(s) 81, 133
CviKI_1 RGCY 2 cut(s) 81, 133
DraI TTTAAA 2 cut(s) 157, 318
FaeI CATG 3 cut(s) 13, 256, 293
FaiI YATR 5 cut(s) 11, 113, 165, 254, 291
FatI CATG 3 cut(s) 9, 252, 289
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 133
Hin1II CATG 3 cut(s) 13, 256, 293
HinfI GANTC 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 26, 119
Hpy188III TCNNGA 1 cut(s) 284
HpyCH4III ACNGT 2 cut(s) 75, 191
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 6 cut(s) 37, 146, 174, 195, 207, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 3 cut(s) 13, 256, 293
LmnI GCTCC 2 cut(s) 78, 87
LpnPI CCDG 4 cut(s) 78, 193, 257, 297
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 342
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 60, 107
MfeI CAATTG 1 cut(s) 270
MluCI AATT 3 cut(s) 27, 102, 270
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 3 cut(s) 156, 309, 317
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 3 cut(s) 37, 195, 258
MwoI GCNNNNNNNGC 1 cut(s) 87
NlaIII CATG 3 cut(s) 13, 256, 293
NlaIV GGNNCC 1 cut(s) 80
PctI GAATGC 3 cut(s) 37, 195, 258
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 80
PstNI CAGNNNCTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 156, 309, 317
SatI GCNGC 1 cut(s) 267
SetI ASST 2 cut(s) 67, 325
SfaNI GCATC 1 cut(s) 342
Sse9I AATT 3 cut(s) 27, 102, 270
SsiI CCGC 1 cut(s) 293
TaaI ACNGT 2 cut(s) 75, 191
TaiI ACGT 1 cut(s) 325
TasI AATT 3 cut(s) 27, 102, 270
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 3 cut(s) 156, 309, 317
Tru9I TTAA 3 cut(s) 156, 309, 317
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 329
Van91I CCANNNNNTGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.