Rh4AG147900

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019356
Physical Location & Seq
Forward (+)
37404728 .. 37408136
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG147900.1

Sequence Viewer

Length: 456 bp
ATGGAGGATTCTGTTGTAAAAGCTGGTGTCCCCGATGATGGAAAAGATTGGCCTCCATTCTTTCGAATTATTCACCATGATATTACTAATGAAATTCCTGTACACTCTCAAAGGCTACAATATATGGCTTTTGCTAGTTGGTTAGTTGTTGCATGTATGACCGTGCATGTATTTGACAAACACAGATTCTGGAAGAGAGTAATTAGGGGTCATGTTTCAGGGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATGAGGACAGATTCTGCCTTGAAGTTTGGTTGGTGTTTCCTGTTTTGCATGGGCATTCTTGCTGCAATTGTTGTCTTTCCTGACCATGCGGTGGTAGGGGGTATTAAGTTTTTAAAACGTAATATCAGCATCGTTCATTTGTTTTAG

Protein Analysis

151

Amino Acids

17.52

Weight (kDa)

9.47

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 16 - 127 5.5e-30 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019356)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana Rw3G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 400
AciI CCGC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 2 cut(s) 102, 290
AfiI CCNNNNNNNGG 4 cut(s) 38, 303, 304, 400
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwNI CAGNNNCTG 2 cut(s) 189, 323
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 32
BfaI CTAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 224, 296
BmsI GCATC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 64
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 303, 304, 400
Bse3DI GCAATG 1 cut(s) 315
BseLI CCNNNNNNNGG 4 cut(s) 38, 303, 304, 400
BseMI GCAATG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 4 cut(s) 38, 303, 304, 400
BsmFI GGGAC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 100
BspACI CCGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 224, 296
BspT104I TTCGAA 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 64
BstNSI RCATGY 2 cut(s) 156, 170
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 52
CaiI CAGNNNCTG 2 cut(s) 189, 323
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 2 cut(s) 101, 289
CviAII CATG 6 cut(s) 77, 153, 167, 212, 358, 395
CviJI RGCY 4 cut(s) 23, 52, 115, 128
CviKI_1 RGCY 4 cut(s) 23, 52, 115, 128
CviQI GTAC 2 cut(s) 101, 289
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 294
FaeI CATG 6 cut(s) 80, 156, 170, 215, 361, 398
FaqI GGGAC 1 cut(s) 14
FatI CATG 6 cut(s) 76, 152, 166, 211, 357, 394
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 1 cut(s) 52
Hin1II CATG 6 cut(s) 80, 156, 170, 215, 361, 398
HinfI GANTC 3 cut(s) 8, 186, 320
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 190, 389
Hpy8I GTNNAC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 152, 166, 242, 357, 374
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 6 cut(s) 80, 156, 170, 215, 361, 398
LpnPI CCDG 7 cut(s) 9, 111, 175, 204, 277, 362, 402
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 447
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 427
MboII GAAGA 1 cut(s) 205
MfeI CAATTG 1 cut(s) 375
MluCI AATT 4 cut(s) 66, 93, 201, 375
MnlI CCTC 2 cut(s) 63, 306
MseI TTAA 2 cut(s) 414, 422
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 363
NdeI CATATG 1 cut(s) 277
NlaIII CATG 6 cut(s) 80, 156, 170, 215, 361, 398
NlaIV GGNNCC 2 cut(s) 224, 296
NspI RCATGY 2 cut(s) 156, 170
NspV TTCGAA 1 cut(s) 64
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 8, 186, 320
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 224, 296
PspPI GGNCC 1 cut(s) 294
PspPPI RGGWCCY 1 cut(s) 294
PstNI CAGNNNCTG 2 cut(s) 189, 323
RsaI GTAC 2 cut(s) 102, 290
RsaNI GTAC 2 cut(s) 101, 289
SaqAI TTAA 2 cut(s) 414, 422
SatI GCNGC 1 cut(s) 372
Sau96I GGNCC 1 cut(s) 294
SetI ASST 2 cut(s) 25, 430
SfaNI GCATC 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 1 cut(s) 294
Sse9I AATT 4 cut(s) 66, 93, 201, 375
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 66, 93, 201, 375
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 3 cut(s) 8, 186, 320
Tru1I TTAA 2 cut(s) 414, 422
Tru9I TTAA 2 cut(s) 414, 422
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 105, 434
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 93
XceI RCATGY 2 cut(s) 156, 170
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.