Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019356

Physical Location & Seq

Genomic Coordinates Forward (+)

61410394 .. 61411412

Gene Structure 1019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGTTCACAAACTGCAGGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATGAGGACAGATTCTGCCTTGAAGTTTGGTTGGTGTTTCCTGTTTTACATGGGCATTCTTGCTGCAATTGATGTCTTTCCTGACCATGCGGTGGTAGGGGGTATTAAGTTTTTAAAACGTAATATCAGCATCGTTCAATTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

84

Amino Acids

9.81

Weight (kDa)

9.62

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	8 - 57	2.3e-14	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019356)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha	Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana	Rw3G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	199
AciI	CCGC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	102, 103, 199
AgsI	TTSAA	2 cut(s)	130, 245
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	9
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	23, 95
BmsI	GCATC	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 103, 199
Bse3DI	GCAATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	102, 103, 199
BseMI	GCAATG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	102, 103, 199
BsmI	GAATGC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	23, 95
BspMAI	CTGCAG	1 cut(s)	20
BspMI	ACCTGC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	157, 194
CviQI	GTAC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	93
FaeI	CATG	2 cut(s)	160, 197
FaiI	YATR	5 cut(s)	51, 76, 78, 158, 195
FatI	CATG	2 cut(s)	156, 193
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	160, 197
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	18, 41, 173
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	160, 197
LpnPI	CCDG	4 cut(s)	4, 76, 161, 201
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	226
MfeI	CAATTG	2 cut(s)	174, 245
MluCI	AATT	2 cut(s)	174, 245
MnlI	CCTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	213, 221
MunI	CAATTG	2 cut(s)	174, 245
Mva1269I	GAATGC	1 cut(s)	162
NdeI	CATATG	1 cut(s)	76
NlaIII	CATG	2 cut(s)	160, 197
NlaIV	GGNNCC	2 cut(s)	23, 95
PctI	GAATGC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	23, 95
PspPI	GGNCC	1 cut(s)	93
PspPPI	RGGWCCY	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	213, 221
SatI	GCNGC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	93
SetI	ASST	2 cut(s)	23, 229
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	93
Sse9I	AATT	2 cut(s)	174, 245
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	229
TasI	AATT	2 cut(s)	174, 245
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	213, 221
Tru9I	TTAA	2 cut(s)	213, 221
TseI	GCWGC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.