Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0019356

Physical Location & Seq

Genomic Coordinates Forward (+)

31462642 .. 31470339

Gene Structure 7698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAAAATTTAGGTGCTCTTACTCTTCAAATTTGGGAAACTCTAAGGACTAGAGGCTTGCTACCACCTGTTAGTTTAGAACACCGATTCTTATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATACTAACCCATTTATACGAAATCTTTCTCTCACATCAATCAGAATTAAGTCAATGGAAAAGATCTAAGTTTTTGTGCACATATATCAAACAAAGAGAGGATTCTGTTGTAAAAGCTGGTGTCCCCAATGATGGAAAAGATTGGCCTCCATTCTTTCGAATTATTCACCATGATATTACCAATGAAATTCCTGTACACTCTCAAAGGCTACAGTATATGGCTTTTGCTAGTTGGTTAGCATGTCTGTACTGCCTGTTTCCATGTTATGATTTACGGTTTAAGATACTACTGTTGATCATTAGTACGCAGCTCACTCCTTTTTTACTTTTAAAAGTATCATTCCAAATATATTTCCTTGCAATCATCTATGCTTTAGTTGGAATACCACTCTCATACGTGCTGTGGTACAGGACCCTTTATCGGGCATTGAGGACAGATTATGCCTTGAAGTTTGGTTGGTGTTTCCTGTTTTACATGGGCATTCTTGCTGCAATTGATGTCTTTCCTGACCATGCGGTGGTAGGGGTAAGAAACATGTTCTTGTTTGAGGATCTTATTAGTAAATGGCATTATGACGACAAAATATATATATATGTTGGGGTGTCCAGGGTAAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

251

Amino Acids

30.06

Weight (kDa)

8.88

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	92 - 208	2.3e-25	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019356)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha	Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana	Rw3G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	652
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	7, 30, 321
AfaI	GTAC	4 cut(s)	330, 383, 439, 542
AfiI	CCNNNNNNNGG	4 cut(s)	266, 555, 556, 652
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	2 cut(s)	29, 583
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	2 cut(s)	251, 445
AluI	AGCT	2 cut(s)	251, 445
Alw21I	GWGCWC	2 cut(s)	19, 215
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	693
AoxI	GGCC	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	442, 623
ApoI	RAATTY	3 cut(s)	7, 30, 321
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	410, 443
Bbv12I	GWGCWC	2 cut(s)	19, 215
BbvI	GCAGC	2 cut(s)	454, 610
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	742
BclI	TGATCA	1 cut(s)	429
BfaI	CTAG	2 cut(s)	51, 363
BfmI	CTRYAG	1 cut(s)	344
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	443, 624
BlsI	GCNGC	2 cut(s)	444, 625
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	742
Bpu14I	TTCGAA	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 555, 556, 652
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	1 cut(s)	741
BseLI	CCNNNNNNNGG	4 cut(s)	266, 555, 556, 652
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	454, 610
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	19, 215
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	266, 555, 556, 652
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	19, 215
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	197, 429, 685
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	693
BspT104I	TTCGAA	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	3 cut(s)	197, 429, 685
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	3 cut(s)	348, 411, 426
Bst6I	CTCTTC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	44, 201
BstKTI	GATC	3 cut(s)	200, 432, 688
BstMBI	GATC	3 cut(s)	197, 429, 685
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	2 cut(s)	378, 673
BstSCI	CCNGG	1 cut(s)	740
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	454, 610
BstX2I	RGATCY	2 cut(s)	197, 685
BstYI	RGATCY	2 cut(s)	197, 685
BsuRI	GGCC	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	546
Csp6I	GTAC	4 cut(s)	329, 382, 438, 541
CviAII	CATG	6 cut(s)	305, 375, 396, 610, 647, 670
CviJI	RGCY	6 cut(s)	57, 251, 280, 343, 356, 445
CviKI_1	RGCY	6 cut(s)	57, 251, 280, 343, 356, 445
CviQI	GTAC	4 cut(s)	329, 382, 438, 541
DdeI	CTNAG	2 cut(s)	44, 201
DpnI	GATC	3 cut(s)	199, 431, 687
DpnII	GATC	3 cut(s)	197, 429, 685
DraI	TTTAAA	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	740
FaeI	CATG	6 cut(s)	308, 378, 399, 613, 650, 673
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	304, 374, 395, 609, 646, 669
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	443, 624
Fsp4HI	GCNGC	2 cut(s)	443, 624
FspBI	CTAG	2 cut(s)	51, 363
GluI	GCNGC	2 cut(s)	443, 624
HaeIII	GGCC	1 cut(s)	280
Hin1II	CATG	6 cut(s)	308, 378, 399, 613, 650, 673
HinfI	GANTC	2 cut(s)	87, 236
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	213, 331
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	2 cut(s)	213, 331
HpyCH4III	ACNGT	3 cut(s)	348, 411, 426
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	213, 494, 626
HpyF3I	CTNAG	2 cut(s)	44, 201
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	6 cut(s)	308, 378, 399, 613, 650, 673
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	197, 429, 685
LpnPI	CCDG	8 cut(s)	81, 237, 339, 401, 529, 614, 654, 727
Lsp1109I	GCAGC	2 cut(s)	454, 610
MaeI	CTAG	2 cut(s)	51, 363
MaeII	ACGT	1 cut(s)	531
MalI	GATC	3 cut(s)	199, 431, 687
MboI	GATC	3 cut(s)	197, 429, 685
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	2 cut(s)	197, 685
MhlI	GDGCHC	2 cut(s)	19, 215
MluCI	AATT	7 cut(s)	7, 30, 179, 294, 321, 627, 748
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	5 cut(s)	47, 226, 291, 558, 676
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	3 cut(s)	182, 414, 464
MspR9I	CCNGG	1 cut(s)	742
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	742
NdeII	GATC	3 cut(s)	197, 429, 685
NlaIII	CATG	6 cut(s)	308, 378, 399, 613, 650, 673
NlaIV	GGNNCC	1 cut(s)	548
NspI	RCATGY	2 cut(s)	378, 673
NspV	TTCGAA	1 cut(s)	292
PciI	ACATGT	1 cut(s)	669
PctI	GAATGC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	87, 236
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	2 cut(s)	444, 625
Ppu21I	YACGTR	1 cut(s)	532
PpuMI	RGGWCCY	1 cut(s)	546
PscI	ACATGT	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	546
PspPPI	RGGWCCY	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	197, 685
RsaI	GTAC	4 cut(s)	330, 383, 439, 542
RsaNI	GTAC	4 cut(s)	329, 382, 438, 541
SaqAI	TTAA	3 cut(s)	182, 414, 464
SatI	GCNGC	2 cut(s)	443, 624
Sau3AI	GATC	3 cut(s)	197, 429, 685
Sau96I	GGNCC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	2 cut(s)	19, 215
SetI	ASST	5 cut(s)	16, 70, 253, 447, 534
SfcI	CTRYAG	1 cut(s)	344
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	546
Sse9I	AATT	7 cut(s)	7, 30, 179, 294, 321, 627, 748
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	2 cut(s)	51, 363
StyD4I	CCNGG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	348, 411, 426
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	292
TasI	AATT	7 cut(s)	7, 30, 179, 294, 321, 627, 748
TatI	WGTACW	2 cut(s)	328, 381
TfiI	GAWTC	2 cut(s)	87, 236
Tru1I	TTAA	3 cut(s)	182, 414, 464
Tru9I	TTAA	3 cut(s)	182, 414, 464
TseI	GCWGC	2 cut(s)	442, 623
TspDTI	ATGAA	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	652
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	3 cut(s)	7, 30, 321
XceI	RCATGY	2 cut(s)	378, 673
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	2 cut(s)	51, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.