Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019356

Physical Location & Seq

Genomic Coordinates Forward (+)

30530272 .. 30534394

Gene Structure 4123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTTTTGCTAGTTGGTTAGTTCTTTCTGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATGAGGACAGATTCTGCCTTGAAGTTTGGTTGGTGTTTCTTGTTTTACACGGGCATTCTTGCTGCAATTGATGTCTTTCCTGACCATGCGGTGGTAGGGGGTATTAAGTTTTTAAAACGTAATATCAGCATCGTTCATTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

92

Amino Acids

10.6

Weight (kDa)

9.1

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	26 - 63	1.2e-07	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019356)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095861 RchiOBHm_Chr2g0134221 RchiOBHm_Chr4g0408101
rosa_samantha	Rh4AG147900 Rh5CG566200 Rh7DG156200 Rh7DG432000
rosa_wichuraiana	Rw3G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	126, 127, 223
AgsI	TTSAA	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 127, 223
Bse3DI	GCAATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	126, 127, 223
BseMI	GCAATG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	126, 127, 223
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
CviQI	GTAC	1 cut(s)	112
DraI	TTTAAA	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	117
FaeI	CATG	1 cut(s)	221
FaiI	YATR	6 cut(s)	61, 86, 88, 100, 102, 219
FatI	CATG	1 cut(s)	217
FauNDI	CATATG	2 cut(s)	86, 100
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	51, 197
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	100, 225
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	1 cut(s)	129
MseI	TTAA	2 cut(s)	237, 245
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	186
NdeI	CATATG	2 cut(s)	86, 100
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	119
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	237, 245
SatI	GCNGC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	117
SetI	ASST	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	253
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	237, 245
Tru9I	TTAA	2 cut(s)	237, 245
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	117
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.