RchiOBHm_Chr2g0126311

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018494
Physical Location & Seq
Forward (+)
40628803 .. 40629213
411 bp
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UTR
Exon/CDS
Intron
PRQ49831

Sequence Viewer

Length: 411 bp
ATGATATTAAGGAAGCTGAGGATATTTGGGGAGTGGGAGTCACAGTGCAAAATGTATGACTTTCGGGTGCTGAACAGGCTTCTTATTGTCTATTGCAAAATGGGTCTTTTGGACAAGGCAGAATCACTTGTAAACAAGGCTGTGGAAGGAAGAATTCCTTATGCCAGCACATGGCATGTGCTAGTAATAGGTTTTATGGAGAATAAGCAGATACCCAGGGCAGTTGAGATGTTGAAGAATGCACTTTCAGTTGGAAGATTCGGGTGGATGCCGAATCCAGCCACTTTCACTGCCTTTCTGGATTATTTGGAATGGAAAGGAGATGTTGAAAGCAATGGAAGAGATGATAATTCTGTCAAACAAATTGGATCCGGTGTCCAAGGGTTTGTATCAGAGACTGTTGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

136

Amino Acids

15.55

Weight (kDa)

6.59

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018494)

Species Orthologous Gene IDs
malus_domestica MD09G1248900.v1.1
prunus_persica Prupe.3G136700_v2.0.a1
pyrus_communis pycom09g16580
rosa_chinensis RchiOBHm_Chr2g0126311
rosa_laevigata RLG00000018900
rosa_multiflora Rmu_ssc0000264.1_g000039
rosa_roxburghii Rroxscaffold_2G00117250
rosa_samantha Rh2AG319400 Rh2BG327800 Rh2DG347500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AclWI GGATC 2 cut(s) 363, 376
AcsI RAATTY 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 235, 329
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 363, 376
AlwNI CAGNNNCTG 1 cut(s) 398
ApoI RAATTY 1 cut(s) 153
BamHI GGATCC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 182, 409
Bme1390I CCNGG 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 215, 216, 379
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 4 cut(s) 23, 29, 53, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 215, 216, 379
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 2 cut(s) 363, 376
BsrDI GCAATG 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 215, 216, 379
BssMI GATC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 45, 400
Bst6I CTCTTC 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 273
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BtsCI GGATG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 50, 288
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 398
CviAII CATG 2 cut(s) 171, 176
CviJI RGCY 4 cut(s) 16, 79, 140, 281
CviKI_1 RGCY 4 cut(s) 16, 79, 140, 281
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 174, 179
FaiI YATR 5 cut(s) 57, 162, 172, 177, 197
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FatI CATG 2 cut(s) 170, 175
FokI GGATG 1 cut(s) 280
FspBI CTAG 2 cut(s) 182, 409
HapII CCGG 1 cut(s) 372
Hin1II CATG 2 cut(s) 174, 179
HinfI GANTC 4 cut(s) 38, 122, 258, 274
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 45, 400
HpyCH4V TGCA 3 cut(s) 48, 96, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 2 cut(s) 174, 179
Kzo9I GATC 1 cut(s) 368
LpnPI CCDG 7 cut(s) 61, 178, 202, 229, 284, 291, 385
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 182, 409
MaeIII GTNAC 1 cut(s) 39
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 4 cut(s) 162, 247, 267, 351
MflI RGATCY 1 cut(s) 368
MluCI AATT 3 cut(s) 153, 349, 363
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 2 cut(s) 12, 397
MseI TTAA 1 cut(s) 8
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 368
NlaIII CATG 2 cut(s) 174, 179
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 1 cut(s) 179
PasI CCCWGGG 1 cut(s) 216
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 122, 258, 274
PflMI CCANNNNNTGG 1 cut(s) 171
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 368
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 368
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 217
SetI ASST 2 cut(s) 18, 193
SfaNI GCATC 1 cut(s) 258
Sse9I AATT 3 cut(s) 153, 349, 363
SspMI CTAG 2 cut(s) 182, 409
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 45, 400
TasI AATT 3 cut(s) 153, 349, 363
TfiI GAWTC 3 cut(s) 122, 258, 274
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 50, 295
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspRI CASTG 2 cut(s) 50, 295
Van91I CCANNNNNTGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 153
XceI RCATGY 1 cut(s) 179
XspI CTAG 2 cut(s) 182, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.