Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018494

Physical Location & Seq

Genomic Coordinates Forward (+)

45655040 .. 45655351

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG319400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTGAAGAATGCACTTTCAGTTGGTAGATTCGGGTGGATGCTGAATCCAGCCACTTTCACTGCCTGTCTGGATTATTTGGAATGGAAAGGAGATGTTGAAGCAATGGAAGAGATGATAATTCTGTCAAAGAAATTGGATCCGGTGTCCAAGGATTTGTATCAGAGACTGTTGAGGACTAGTGTTGCAGCTGGAACACCATTTCCAGTAATTCTTGAACAGATGAAAATGGATGATTTACTGCTGTTAAAGAAGCTTACATGCATCCTTGAAACAAGCCCAGTTAGCTTATTGGAATTCTGCTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

5.04

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018494)

Species	Orthologous Gene IDs
malus_domestica	MD09G1248900.v1.1
prunus_persica	Prupe.3G136700_v2.0.a1
pyrus_communis	pycom09g16580
rosa_chinensis	RchiOBHm_Chr2g0126311
rosa_laevigata	RLG00000018900
rosa_multiflora	Rmu_ssc0000264.1_g000039
rosa_roxburghii	Rroxscaffold_2G00117250
rosa_samantha	Rh2AG319400 Rh2BG327800 Rh2DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	134, 147
AcsI	RAATTY	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	7, 101, 218, 272
AhlI	ACTAGT	1 cut(s)	179
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	3 cut(s)	191, 256, 288
AluI	AGCT	3 cut(s)	191, 256, 288
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	134, 147
AlwNI	CAGNNNCTG	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	160
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	30, 273
BmuI	ACTGGG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	206, 281
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	45, 238, 264
BseJI	GATNNNNATC	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	206, 281
BseXI	GCAGC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	134, 147
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	206, 281
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	45, 238, 264
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	45, 238, 264
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	169
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	5 cut(s)	53, 191, 256, 279, 288
CviKI_1	RGCY	5 cut(s)	53, 191, 256, 279, 288
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	264
FaiI	YATR	1 cut(s)	262
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	52, 245, 251
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	30, 46
HpaII	CCGG	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	71, 215
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	14, 188, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	56, 63, 79, 156, 177, 219, 294
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	2 cut(s)	30, 273
MaeI	CTAG	1 cut(s)	180
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	19, 122
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	4 cut(s)	120, 134, 210, 296
MnlI	CCTC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	264
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	30, 46
PkrI	GCNGC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	139
SetI	ASST	3 cut(s)	193, 258, 290
SfaNI	GCATC	2 cut(s)	30, 273
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	4 cut(s)	120, 134, 210, 296
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	171
TasI	AATT	4 cut(s)	120, 134, 210, 296
TfiI	GAWTC	2 cut(s)	30, 46
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.