RLG00000018900

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018494
Physical Location & Seq
Forward (+)
42492099 .. 42492639
541 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018900

Sequence Viewer

Length: 447 bp
ATGTATGACTTTCGGTTGCTGAACAGGCTTCTTATTGTCTATTGCAGAATGGGTCTTTTGGACAAGGCAGAATCACTTGTAAACAAGGCTGTGGAAGGAAGAATTCCTTATGCCAGCACATGGCATGTGCTAGCAATAGCCACTTTCACTGCCTGTCTGGATTATTTGGAATGGAAAGGAGATGTTGAAGCAATGGAAGAGACGATAATTCTGTCAAAGAAATTGGGTCCGGTGTCCAAGGATTTGTCTCACAGACTGTTGAGGACTAGTGTTGCAGCTGGAAAACCATTTCCAGTAATTCTTGATCAGATGAAAATGGATGATTTACTGCTGTTAAAGAAGCTTACATGCATCTTGAAACAAGCCCAGTTAGCCTATTGGAATTCTGCTCATTGTAAGAGAAGTAAGAAAGTTTCAAAAGATTTAAGAGGACTTCAAAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

9.41

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018494)

Species Orthologous Gene IDs
malus_domestica MD09G1248900.v1.1
prunus_persica Prupe.3G136700_v2.0.a1
pyrus_communis pycom09g16580
rosa_chinensis RchiOBHm_Chr2g0126311
rosa_laevigata RLG00000018900
rosa_multiflora Rmu_ssc0000264.1_g000039
rosa_roxburghii Rroxscaffold_2G00117250
rosa_samantha Rh2AG319400 Rh2BG327800 Rh2DG347500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AcsI RAATTY 3 cut(s) 102, 382, 439
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 4 cut(s) 188, 358, 417, 437
AhlI ACTAGT 1 cut(s) 266
AluBI AGCT 2 cut(s) 278, 343
AluI AGCT 2 cut(s) 278, 343
Alw26I GTCTC 2 cut(s) 194, 252
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 3 cut(s) 102, 382, 439
AspS9I GGNCC 1 cut(s) 227
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 287
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 194, 252
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 2 cut(s) 131, 267
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 360
BmtI GCTAGC 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 293, 367
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 293, 367
BseXI GCAGC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 194, 252
BsmBI CGTCTC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 228
BspOI GCTAGC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 2 cut(s) 293, 367
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 115, 132
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 194, 252
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 25, 371
BstNSI RCATGY 2 cut(s) 128, 351
BstV1I GCAGC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 115, 132
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 3 cut(s) 120, 125, 348
CviJI RGCY 7 cut(s) 28, 89, 140, 278, 343, 365, 374
CviKI_1 RGCY 7 cut(s) 28, 89, 140, 278, 343, 365, 374
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 227
EcoRI GAATTC 2 cut(s) 102, 382
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 3 cut(s) 123, 128, 351
FaiI YATR 5 cut(s) 6, 111, 121, 126, 349
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FatI CATG 3 cut(s) 119, 124, 347
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 131, 267
GluI GCNGC 1 cut(s) 276
HapII CCGG 1 cut(s) 230
Hin1II CATG 3 cut(s) 123, 128, 351
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 4 cut(s) 158, 302, 355, 444
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 45, 275, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 371
Hsp92II CATG 3 cut(s) 123, 128, 351
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 8 cut(s) 10, 127, 143, 166, 243, 264, 306, 380
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 131, 267
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 111, 209
MluCI AATT 6 cut(s) 102, 207, 221, 297, 382, 439
MnlI CCTC 2 cut(s) 255, 422
Mph1103I ATGCAT 1 cut(s) 353
MseI TTAA 2 cut(s) 335, 425
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 25, 371
NdeII GATC 1 cut(s) 304
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 123, 128, 351
NlaIV GGNNCC 1 cut(s) 228
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 2 cut(s) 128, 351
PfeI GAWTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 335, 425
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 227
SetI ASST 2 cut(s) 280, 345
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 6 cut(s) 102, 207, 221, 297, 382, 439
SspMI CTAG 2 cut(s) 131, 267
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 258
TasI AATT 6 cut(s) 102, 207, 221, 297, 382, 439
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 335, 425
Tru9I TTAA 2 cut(s) 335, 425
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 3 cut(s) 102, 382, 439
XceI RCATGY 2 cut(s) 128, 351
XspI CTAG 2 cut(s) 131, 267
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.