RchiOBHm_Chr2g0128421

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004364
Physical Location & Seq
Reverse (-)
43455663 .. 43463594
7932 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50019

Sequence Viewer

Length: 1329 bp
ATGTATCTTAGGTGCAGTCTAGGCTCAGTTTCTTTGGGAGTTATGTCTGCTTCAGTTAAGAGTTTTCCAGAACATCCTTCCTTTCGGGCACGTGGCCGGTCCATGCTCGGTGGTGATAGGAAGTCTTTTAGAGATTATGCTGATGACATGCCTAAATCAAGCTACAGGTCAGATGGTGCATCAACATCAGAAGCACGTAGATTAAGAAGAAGAAGCATTAGTATTACTCCAGAGATTGGTGATGACATCGTAAGGGCTGTACGTGCGATGAATGAAACATTGAAGCAAAACCGTCTCTTAAGAGGGCAGGGAGATGAGAGGTCATACAGCCACTCTTCAAATGACAGTAATAATCTTCAGAATAATGACCAAATCAGTACACAGAAAGCAATATCATTACCTTCATCGCCGCATCAGTATAGGAGCCAAACATCTGAGAGGGCTGGACCTTCAGAATTCACGAGAAGTGCTGAACTGGTTTCAACATGGAACAGAATTCTTGAATCTGCCACATTTGATAACAAACCTCTATTGCCTTACCAAGAATGGAATATTGATTTCTCAGAATTGAGTGTTGGAACTCGTGTTGGAATAGGATTCTTTGGAGAAGTCTTTCGTGGCATTTGGAATGGAACAGATGTTGCAATTAAGGTTTTTTTAGAGCAAGATCTTACTACTGAGAACATGGAAGATTTCTGCAATGAAATATCCATTCTTAGCCGCATTCGGCATCCAAATGTCATTTTATTTCTGGGTGCATGCACAAAGCCTCCACGCTTGTCAATGGTTACAGAATACATGGAGATGGGATCCTTGTATTATTTGATTCATATAAGTGGCCAGAAGAAGAAGCTTAGCTGGCGAAGGAAACTAAAAATGTTGCGCGATATATGCAGGGGGTTGATGTGCATACACCGCATGAAGATAGTTCATCGTGACCTAAAGAGCGCAAATTGTCTAGTGAATAAGCATTGGGCTGTCAAGATTTGTGATTTTGGGCTCTCAAGAATGATGACTGAGGCAAACATGAAGGACTCCTCATCTGCTGGAACTCCTGAATGGATGGCACCTGAGCTTATCCGAAATGAACCCTTCACAGAAAAGTGTGATATATTCAGCTTTGGGGTGATAATGTGGGAGCTCTGCACTCTAAATAGACCTTGGGAAGGAGTGCCACCAGAGAGGGTTGTTTATGCTGTTGCCAATGAGGGTTCACGGTTAGACATTCCGGATAATCCACTAGGCAGGCTCATCTCAGATTGTTGGACAGAGCCGCATTTACGACCAACCTGTGATGAGATACTTTCGCGCTTGGTAGACTGCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

442

Amino Acids

50.39

Weight (kDa)

8.39

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 192 - 438 2e-63 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 192 - 435 1.1e-51 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1066
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 1317
AccII CGCG 2 cut(s) 885, 1309
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 4 cut(s) 410, 721, 916, 1274
AclWI GGATC 2 cut(s) 804, 817
AcoI YGGCCR 2 cut(s) 94, 838
AcsI RAATTY 2 cut(s) 455, 495
AcuI CTGAAG 3 cut(s) 36, 341, 435
AcvI CACGTG 1 cut(s) 92
AfaI GTAC 2 cut(s) 261, 379
AfiI CCNNNNNNNGG 2 cut(s) 236, 1166
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 4 cut(s) 283, 339, 483, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 6 cut(s) 162, 853, 858, 1075, 1119, 1141
AluI AGCT 6 cut(s) 162, 853, 858, 1075, 1119, 1141
Alw21I GWGCWC 1 cut(s) 1143
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 804, 817
Aor13HI TCCGGA 1 cut(s) 1228
AoxI GGCC 2 cut(s) 94, 838
ApoI RAATTY 2 cut(s) 455, 495
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 3 cut(s) 885, 950, 1311
AspS9I GGNCC 2 cut(s) 99, 446
AsuHPI GGTGA 3 cut(s) 125, 251, 1138
AvaII GGWCC 2 cut(s) 99, 446
BaeGI GKGCMC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 840
BamHI GGATCC 1 cut(s) 809
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 2 cut(s) 1002, 1143
BauI CACGAG 2 cut(s) 460, 582
BbrPI CACGTG 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 1143
BccI CCATC 3 cut(s) 167, 799, 1057
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 3 cut(s) 20, 959, 1241
BfmI CTRYAG 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 298
BglII AGATCT 1 cut(s) 667
BisI GCNGC 3 cut(s) 410, 721, 1274
BlpI GCTNAGC 1 cut(s) 854
BlsI GCNGC 3 cut(s) 411, 722, 1275
Bme18I GGWCC 2 cut(s) 99, 446
BmgT120I GGNCC 2 cut(s) 99, 446
BmiI GGNNCC 3 cut(s) 425, 811, 1068
BmsI GCATC 3 cut(s) 188, 421, 739
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 1071
Bpu1102I GCTNAGC 1 cut(s) 854
BpuEI CTTGAG 1 cut(s) 988
BsaAI YACGTR 3 cut(s) 92, 197, 263
BsaJI CCNNGG 1 cut(s) 1160
BsaWI WCCGGW 1 cut(s) 1228
BsaXI ACNNNNNCTCC 2 cut(s) 754, 784
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 1166
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 706
BseAI TCCGGA 1 cut(s) 1228
BseDI CCNNGG 1 cut(s) 1160
BseGI GGATG 3 cut(s) 73, 730, 1068
BseLI CCNNNNNNNGG 2 cut(s) 236, 1166
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 7 cut(s) 39, 426, 576, 669, 1008, 1062, 1269
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 1027
BseSI GKGCMC 1 cut(s) 91
BsgI GTGCAG 2 cut(s) 34, 1129
Bsh1236I CGCG 2 cut(s) 885, 1309
BshFI GGCC 2 cut(s) 96, 840
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 1143
BsiSI CCGG 2 cut(s) 97, 1229
BslI CCNNNNNNNGG 2 cut(s) 236, 1166
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 2 cut(s) 96, 840
Bsp1286I GDGCHC 3 cut(s) 91, 1002, 1143
Bsp13I TCCGGA 1 cut(s) 1228
Bsp143I GATC 2 cut(s) 667, 809
Bsp1720I GCTNAGC 1 cut(s) 854
BspACI CCGC 4 cut(s) 410, 721, 916, 1274
BspANI GGCC 2 cut(s) 96, 840
BspCNI CTCAG 7 cut(s) 38, 427, 575, 670, 1009, 1063, 1268
BspEI TCCGGA 1 cut(s) 1228
BspFNI CGCG 2 cut(s) 885, 1309
BspLI GGNNCC 3 cut(s) 425, 811, 1068
BspPI GGATC 2 cut(s) 804, 817
BspT107I GGYRCC 1 cut(s) 1066
BspTI CTTAAG 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 1 cut(s) 480
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 1160
BssMI GATC 2 cut(s) 667, 809
BssSI CACGAG 2 cut(s) 460, 582
BssT1I CCWWGG 1 cut(s) 1160
Bst2BI CACGAG 2 cut(s) 460, 582
Bst4CI ACNGT 3 cut(s) 293, 347, 1218
Bst6I CTCTTC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 3 cut(s) 92, 197, 263
BstC8I GCNNGC 3 cut(s) 760, 860, 1247
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 3 cut(s) 73, 730, 1068
BstFNI CGCG 2 cut(s) 885, 1309
BstHHI GCGC 3 cut(s) 885, 950, 1311
BstKTI GATC 2 cut(s) 670, 812
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 667, 809
BstMWI GCNNNNNNNGC 5 cut(s) 21, 263, 859, 891, 915
BstNSI RCATGY 2 cut(s) 151, 762
BstSFI CTRYAG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 2 cut(s) 885, 1309
BstX2I RGATCY 2 cut(s) 667, 809
BstYI RGATCY 2 cut(s) 667, 809
BsuRI GGCC 2 cut(s) 96, 840
BtgZI GCGATG 2 cut(s) 281, 390
BtsCI GGATG 3 cut(s) 73, 730, 1068
Cac8I GCNNGC 3 cut(s) 760, 860, 1247
CfoI GCGC 3 cut(s) 885, 950, 1311
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 99, 446
Csp6I GTAC 2 cut(s) 260, 378
CviAII CATG 8 cut(s) 103, 148, 486, 685, 759, 799, 919, 1027
CviQI GTAC 2 cut(s) 260, 378
DpnI GATC 2 cut(s) 669, 811
DpnII GATC 2 cut(s) 667, 809
EaeI YGGCCR 2 cut(s) 94, 838
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 1141
Eco130I CCWWGG 1 cut(s) 1160
Eco24I GRGCYC 2 cut(s) 1002, 1143
Eco47I GGWCC 2 cut(s) 99, 446
Eco53kI GAGCTC 1 cut(s) 1141
Eco57I CTGAAG 3 cut(s) 36, 341, 435
Eco72I CACGTG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 1141
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoRI GAATTC 2 cut(s) 455, 495
EcoT14I CCWWGG 1 cut(s) 1160
EcoT38I GRGCYC 2 cut(s) 1002, 1143
ErhI CCWWGG 1 cut(s) 1160
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 8 cut(s) 106, 151, 489, 688, 762, 802, 922, 1030
FatI CATG 8 cut(s) 102, 147, 485, 684, 758, 798, 918, 1026
FblI GTMKAC 1 cut(s) 1317
Fnu4HI GCNGC 3 cut(s) 410, 721, 1274
FokI GGATG 3 cut(s) 60, 717, 1075
FriOI GRGCYC 2 cut(s) 1002, 1143
Fsp4HI GCNGC 3 cut(s) 410, 721, 1274
FspBI CTAG 3 cut(s) 20, 959, 1241
GlaI GCGC 3 cut(s) 884, 949, 1310
GluI GCNGC 3 cut(s) 410, 721, 1274
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 96, 840
HapII CCGG 2 cut(s) 97, 1229
HhaI GCGC 3 cut(s) 885, 950, 1311
Hin1II CATG 8 cut(s) 106, 151, 489, 688, 762, 802, 922, 1030
Hin6I GCGC 3 cut(s) 883, 948, 1309
HinP1I GCGC 3 cut(s) 883, 948, 1309
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 4 cut(s) 503, 597, 826, 1034
HpaII CCGG 2 cut(s) 97, 1229
HphI GGTGA 3 cut(s) 125, 251, 1138
Hpy166II GTNNAC 3 cut(s) 380, 1214, 1318
Hpy188I TCNGA 8 cut(s) 172, 190, 360, 436, 454, 565, 1082, 1258
Hpy188III TCNNGA 9 cut(s) 68, 230, 460, 500, 935, 982, 1005, 1055, 1229
Hpy8I GTNNAC 3 cut(s) 380, 1214, 1318
HpyAV CCTTC 7 cut(s) 87, 411, 459, 858, 1024, 1102, 1160
HpyCH4III ACNGT 3 cut(s) 293, 347, 1218
HpyCH4IV ACGT 3 cut(s) 91, 196, 262
HpyCH4V TGCA 9 cut(s) 15, 179, 644, 699, 758, 762, 894, 909, 1146
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 263, 859, 891, 915
HpySE526I ACGT 3 cut(s) 91, 196, 262
Hsp92II CATG 8 cut(s) 106, 151, 489, 688, 762, 802, 922, 1030
HspAI GCGC 3 cut(s) 883, 948, 1309
Kpn2I TCCGGA 1 cut(s) 1228
Kzo9I GATC 2 cut(s) 667, 809
LmnI GCTCC 2 cut(s) 423, 1138
LweI GCATC 3 cut(s) 188, 421, 739
MaeI CTAG 3 cut(s) 20, 959, 1241
MaeII ACGT 3 cut(s) 91, 196, 262
MaeIII GTNAC 2 cut(s) 787, 935
MalI GATC 2 cut(s) 669, 811
MboI GATC 2 cut(s) 667, 809
MboII GAAGA 8 cut(s) 219, 222, 327, 347, 701, 856, 859, 934
MflI RGATCY 2 cut(s) 667, 809
MhlI GDGCHC 3 cut(s) 91, 1002, 1143
MlsI TGGCCA 1 cut(s) 840
MluCI AATT 5 cut(s) 455, 495, 566, 645, 952
MluNI TGGCCA 1 cut(s) 840
MlyI GAGTC 1 cut(s) 1028
MmeI TCCRAC 3 cut(s) 556, 568, 1244
MnlI CCTC 9 cut(s) 296, 312, 432, 537, 780, 1012, 1048, 1176, 1201
Mox20I TGGCCA 1 cut(s) 840
MroI TCCGGA 1 cut(s) 1228
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 1 cut(s) 840
MseI TTAA 4 cut(s) 57, 203, 299, 648
MslI CAYNNNNRTG 3 cut(s) 735, 803, 834
Msp20I TGGCCA 1 cut(s) 840
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 2 cut(s) 97, 1229
Mva1269I GAATGC 1 cut(s) 723
MvnI CGCG 2 cut(s) 885, 1309
MwoI GCNNNNNNNGC 5 cut(s) 21, 263, 859, 891, 915
NdeII GATC 2 cut(s) 667, 809
NlaIII CATG 8 cut(s) 106, 151, 489, 688, 762, 802, 922, 1030
NlaIV GGNNCC 3 cut(s) 425, 811, 1068
NmuCI GTSAC 1 cut(s) 935
NspI RCATGY 2 cut(s) 151, 762
PaeI GCATGC 1 cut(s) 762
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 3 cut(s) 503, 597, 826
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 411, 722, 1275
PleI GAGTC 1 cut(s) 1028
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
PpsI GAGTC 1 cut(s) 1028
Ppu21I YACGTR 3 cut(s) 92, 197, 263
Psp124BI GAGCTC 1 cut(s) 1143
PspCI CACGTG 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 425, 811, 1068
PspPI GGNCC 2 cut(s) 99, 446
PsuI RGATCY 2 cut(s) 667, 809
RsaI GTAC 2 cut(s) 261, 379
RsaNI GTAC 2 cut(s) 260, 378
RseI CAYNNNNRTG 3 cut(s) 735, 803, 834
SacI GAGCTC 1 cut(s) 1143
SaqAI TTAA 4 cut(s) 57, 203, 299, 648
SatI GCNGC 3 cut(s) 410, 721, 1274
Sau3AI GATC 2 cut(s) 667, 809
Sau96I GGNCC 2 cut(s) 99, 446
SchI GAGTC 1 cut(s) 1028
SduI GDGCHC 3 cut(s) 91, 1002, 1143
SfaNI GCATC 3 cut(s) 188, 421, 739
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 99, 446
SmiMI CAYNNNNRTG 3 cut(s) 735, 803, 834
SmlI CTYRAG 2 cut(s) 298, 1003
SmoI CTYRAG 2 cut(s) 298, 1003
SphI GCATGC 1 cut(s) 762
Sse9I AATT 5 cut(s) 455, 495, 566, 645, 952
SsiI CCGC 4 cut(s) 410, 721, 916, 1274
SspI AATATT 1 cut(s) 553
SspMI CTAG 3 cut(s) 20, 959, 1241
SstI GAGCTC 1 cut(s) 1143
StyI CCWWGG 1 cut(s) 1160
TaaI ACNGT 3 cut(s) 293, 347, 1218
TaiI ACGT 3 cut(s) 94, 199, 265
TasI AATT 5 cut(s) 455, 495, 566, 645, 952
TatI WGTACW 1 cut(s) 377
TauI GCSGC 3 cut(s) 412, 723, 1276
TfiI GAWTC 3 cut(s) 503, 597, 826
Tru1I TTAA 4 cut(s) 57, 203, 299, 648
Tru9I TTAA 4 cut(s) 57, 203, 299, 648
TseFI GTSAC 1 cut(s) 935
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 9 cut(s) 284, 288, 393, 717, 818, 920, 935, 1043, 1101
Van91I CCANNNNNTGG 1 cut(s) 236
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 99, 446
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 2 cut(s) 455, 495
XceI RCATGY 2 cut(s) 151, 762
XmiI GTMKAC 1 cut(s) 1317
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 3 cut(s) 20, 959, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.