Rorug02G0289700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004364
Physical Location & Seq
Reverse (-)
31725279 .. 31732357
7079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0289700.1

Sequence Viewer

Length: 930 bp
ATGGCTCCTCCTCCCATCCTTTCATTGGCTCTGCCTTCCGAGACTGGCCGAGTTCTCAGTATCCAATCCCACACTGTTCAGGGATATGTTGGGAATAAATCAGCTGTGTTCCCCCTGCAATTATTAGGCTATGATGTGGATCCAATTAATTCTGTCCAGTTCTCAAACCACACAGGATACCCAACATTTAAGGGTCAAGTTTTAAATGGAGAACAGCTTTGGGAATTGATACAAGGCCTTGAATCAAATGATCTATTATACTACACTCATTTATTGACAGGTTATATTGGTTCAGTTTCTTTTCTGAGCACTGTATTGGAAGTTGTCAATAAACTTCGCTCTATAAACCCAAAACTTAGATACGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTCCCTCCAGAGCTGGTATCTGTATATCGTGAAAAGGTTGTCCCTGTTGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAATTGTTGACCAACTCCAGGATCGAGTCTGAAAGAGATGGCCGTGAAGCTTGTAACATTCTTCACGCTGCTGGACCATCAATGGTTGTGATAACAAGCATAAATATAGATGGTAATCTTCTTCTAATTGGTAGTCATCAAAAGGAACAAGGTCTGTCTCCAGAGCAATTCAAGATTGTGATTCCTAAGATTCCTGCGTATTTCACGGGAACAGGAGATCTTACAACTGCGCTTCTACTTGGTTGGAGTAATAAATATCCTAACAACCTAGATAAGGCCGCGGAGCTTGCTGTATCAACCTTGCAGGCCCTTCTGCAGAGAACAGTAAATGATTATAAAACTGCTGGCCATGATCCCCAGTCAACCAGTTTAGAGATTCGATTAATACAAAGTCAAGATGACATTCGTCAACCTGAGATTAAATTCAGAGCTGAAAGATATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

309

Amino Acids

34.14

Weight (kDa)

5.43

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phos_pyr_kin PF08543 93 - 199 2.2e-14 Phosphomethylpyrimidine kinase
PfkB PF00294 145 - 194 5.2e-06 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AccII CGCG 1 cut(s) 764
AciI CCGC 2 cut(s) 762, 764
AclWI GGATC 5 cut(s) 134, 147, 365, 512, 830
AcoI YGGCCR 3 cut(s) 46, 523, 829
AcsI RAATTY 1 cut(s) 905
AfiI CCNNNNNNNGG 4 cut(s) 25, 380, 501, 757
AgsI TTSAA 4 cut(s) 242, 456, 479, 655
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 7 cut(s) 104, 217, 397, 415, 533, 769, 914
AluI AGCT 7 cut(s) 104, 217, 397, 415, 533, 769, 914
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 35, 645
AlwI GGATC 5 cut(s) 134, 147, 365, 512, 830
AoxI GGCC 6 cut(s) 46, 235, 523, 759, 789, 829
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 905
AseI ATTAAT 2 cut(s) 147, 866
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 2 cut(s) 557, 790
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 557
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 538
BccI CCATC 5 cut(s) 23, 373, 515, 568, 587
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 502
BciVI GTATCC 2 cut(s) 71, 170
BcoDI GTCTC 2 cut(s) 35, 645
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 797
BfuI GTATCC 2 cut(s) 71, 170
BglII AGATCT 1 cut(s) 700
BisI GCNGC 2 cut(s) 552, 762
BlsI GCNGC 2 cut(s) 553, 763
Bme1390I CCNGG 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 557, 790
BmiI GGNNCC 2 cut(s) 6, 141
BmrFI CCNGG 1 cut(s) 502
BmrI ACTGGG 1 cut(s) 835
BmuI ACTGGG 1 cut(s) 835
BoxI GACNNNNGTC 1 cut(s) 888
BpmI CTGGAG 3 cut(s) 393, 484, 627
BsaBI GATNNNNATC 2 cut(s) 138, 597
BsaJI CCNNGG 1 cut(s) 762
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 380, 501, 757
Bse1I ACTGG 6 cut(s) 49, 157, 374, 472, 841, 849
Bse8I GATNNNNATC 2 cut(s) 138, 597
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 2 cut(s) 138, 597
BseLI CCNNNNNNNGG 4 cut(s) 25, 380, 501, 757
BseMII CTCAG 3 cut(s) 70, 296, 888
BseNI ACTGG 6 cut(s) 49, 157, 374, 472, 841, 849
BseXI GCAGC 1 cut(s) 538
Bsh1236I CGCG 1 cut(s) 764
BshFI GGCC 6 cut(s) 48, 237, 525, 761, 791, 831
BsiHKAI GWGCWC 1 cut(s) 311
BslFI GGGAC 2 cut(s) 389, 428
BslI CCNNNNNNNGG 4 cut(s) 25, 380, 501, 757
BsmAI GTCTC 2 cut(s) 35, 645
BsmFI GGGAC 2 cut(s) 389, 428
BsnI GGCC 6 cut(s) 48, 237, 525, 761, 791, 831
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 6 cut(s) 139, 250, 370, 504, 700, 835
BspACI CCGC 2 cut(s) 762, 764
BspANI GGCC 6 cut(s) 48, 237, 525, 761, 791, 831
BspCNI CTCAG 3 cut(s) 69, 297, 889
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 2 cut(s) 6, 141
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 5 cut(s) 134, 147, 365, 512, 830
BsrI ACTGG 6 cut(s) 49, 157, 374, 472, 841, 849
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 6 cut(s) 139, 250, 370, 504, 700, 835
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 3 cut(s) 76, 313, 808
BstC8I GCNNGC 3 cut(s) 771, 789, 829
BstDEI CTNAG 5 cut(s) 56, 305, 356, 669, 897
BstDSI CCRYGG 1 cut(s) 762
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 6 cut(s) 142, 253, 373, 507, 703, 838
BstMAI GTCTC 2 cut(s) 35, 645
BstMBI GATC 6 cut(s) 139, 250, 370, 504, 700, 835
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNI CCWGG 1 cut(s) 502
BstPAI GACNNNNGTC 1 cut(s) 888
BstSCI CCNGG 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 797
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 1 cut(s) 538
BstX2I RGATCY 2 cut(s) 139, 700
BstYI RGATCY 2 cut(s) 139, 700
BsuI GTATCC 2 cut(s) 71, 170
BsuRI GGCC 6 cut(s) 48, 237, 525, 761, 791, 831
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 72, 309, 381
Cac8I GCNNGC 3 cut(s) 771, 789, 829
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 2 cut(s) 557, 790
Cfr42I CCGCGG 1 cut(s) 765
CviAII CATG 1 cut(s) 833
DdeI CTNAG 5 cut(s) 56, 305, 356, 669, 897
DpnI GATC 6 cut(s) 141, 252, 372, 506, 702, 837
DpnII GATC 6 cut(s) 139, 250, 370, 504, 700, 835
DraI TTTAAA 1 cut(s) 204
EaeI YGGCCR 3 cut(s) 46, 523, 829
Eco147I AGGCCT 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 557
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 500
FaeI CATG 1 cut(s) 836
FaqI GGGAC 2 cut(s) 389, 428
FatI CATG 1 cut(s) 832
Fnu4HI GCNGC 2 cut(s) 552, 762
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 2 cut(s) 552, 762
FspBI CTAG 1 cut(s) 752
GlaI GCGC 1 cut(s) 714
GluI GCNGC 2 cut(s) 552, 762
GsuI CTGGAG 3 cut(s) 393, 484, 627
HaeIII GGCC 6 cut(s) 48, 237, 525, 761, 791, 831
HhaI GCGC 1 cut(s) 715
Hin1II CATG 1 cut(s) 836
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HincII GTYRAC 4 cut(s) 462, 492, 846, 893
HindII GTYRAC 4 cut(s) 462, 492, 846, 893
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 6 cut(s) 242, 463, 509, 664, 673, 859
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 4 cut(s) 462, 492, 846, 893
Hpy188I TCNGA 4 cut(s) 40, 306, 514, 911
Hpy188III TCNNGA 5 cut(s) 410, 431, 644, 655, 878
Hpy8I GTNNAC 4 cut(s) 462, 492, 846, 893
HpyAV CCTTC 3 cut(s) 45, 383, 803
HpyCH4III ACNGT 3 cut(s) 76, 313, 808
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 118, 787, 799
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 5 cut(s) 56, 305, 356, 669, 897
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 1 cut(s) 836
HspAI GCGC 1 cut(s) 713
KspI CCGCGG 1 cut(s) 765
Kzo9I GATC 6 cut(s) 139, 250, 370, 504, 700, 835
LmnI GCTCC 2 cut(s) 10, 766
Lsp1109I GCAGC 1 cut(s) 538
MaeI CTAG 1 cut(s) 752
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 536
MalI GATC 6 cut(s) 141, 252, 372, 506, 702, 837
MboI GATC 6 cut(s) 139, 250, 370, 504, 700, 835
MboII GAAGA 3 cut(s) 536, 593, 596
MflI RGATCY 2 cut(s) 139, 700
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 8 cut(s) 119, 144, 148, 224, 485, 609, 650, 905
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 2 cut(s) 457, 518
MmeI TCCRAC 1 cut(s) 707
MnlI CCTC 3 cut(s) 18, 21, 417
Mox20I TGGCCA 1 cut(s) 831
MscI TGGCCA 1 cut(s) 831
MseI TTAA 5 cut(s) 147, 189, 203, 866, 903
Msp20I TGGCCA 1 cut(s) 831
MspA1I CMGCKG 2 cut(s) 104, 764
MspR9I CCNGG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 502
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 1 cut(s) 770
NdeII GATC 6 cut(s) 139, 250, 370, 504, 700, 835
NlaIII CATG 1 cut(s) 836
NlaIV GGNNCC 2 cut(s) 6, 141
NmeAIII GCCGAG 1 cut(s) 74
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 4 cut(s) 242, 664, 673, 859
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 2 cut(s) 553, 763
PleI GAGTC 2 cut(s) 457, 517
PpsI GAGTC 2 cut(s) 457, 517
PshAI GACNNNNGTC 1 cut(s) 888
PshBI ATTAAT 2 cut(s) 147, 866
PsiI TTATAA 1 cut(s) 819
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 6, 141
PspPI GGNCC 2 cut(s) 557, 790
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 2 cut(s) 139, 700
PvuII CAGCTG 1 cut(s) 104
SacII CCGCGG 1 cut(s) 765
SaqAI TTAA 5 cut(s) 147, 189, 203, 866, 903
SatI GCNGC 2 cut(s) 552, 762
Sau3AI GATC 6 cut(s) 139, 250, 370, 504, 700, 835
Sau96I GGNCC 2 cut(s) 557, 790
SchI GAGTC 2 cut(s) 457, 518
ScrFI CCNGG 1 cut(s) 502
SduI GDGCHC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 797
Sfr303I CCGCGG 1 cut(s) 765
SgrBI CCGCGG 1 cut(s) 765
SinI GGWCC 1 cut(s) 557
Sse9I AATT 8 cut(s) 119, 144, 148, 224, 485, 609, 650, 905
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 2 cut(s) 762, 764
SspMI CTAG 1 cut(s) 752
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 500
TaaI ACNGT 3 cut(s) 76, 313, 808
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 507, 862
TasI AATT 8 cut(s) 119, 144, 148, 224, 485, 609, 650, 905
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 4 cut(s) 242, 664, 673, 859
Tru1I TTAA 5 cut(s) 147, 189, 203, 866, 903
Tru9I TTAA 5 cut(s) 147, 189, 203, 866, 903
TscAI CASTG 3 cut(s) 79, 316, 381
TseI GCWGC 1 cut(s) 551
TspDTI ATGAA 2 cut(s) 12, 402
TspRI CASTG 3 cut(s) 79, 316, 381
VpaK11BI GGWCC 1 cut(s) 557
VspI ATTAAT 2 cut(s) 147, 866
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 1 cut(s) 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.