Rorug02G0289500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004364
Physical Location & Seq
Forward (+)
31683839 .. 31687393
3555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0289500.1

Sequence Viewer

Length: 699 bp
ATGGGGAGGGCTGCTTTGCTCGCATCGGATTTGGTAATCTCATTCATGTGGGTCTTGTCAGGAGTTTTAATCAAGAAATTTATCCACAATGTTTCGGGGTTGGGTCACGAACCCAGTGGTGATATCCTCTACTTCGCCCTCTCAATCATCAACATGTTTTTCTTTGCTTTCTTGGCTAAGATTACCAAGGGTGGCACCTACAATCCTCTCACCGTTTTCTCTGACGCAATCACCGGCGATTTCAGCCGTTTCCTTTTCACTGTTGCTGCCAGAATCCCTGCTCAGGTTATTGGCTCTGTTGCTGGGGTTAAGCTCATAATGGAGATCTTTCCTGGAATAGGTCTCGGGCCACGTTTGACTGTTGACATCCATCGAGGGGCCCTTACAGAAGGATTGCTGACATTTGCAATCGTTACTATCTCACTTGGTCTTTACAGAAAAATCCCGGGGAACTTTTTCATGAAGACATGGATCTCAAGTGTTTCCAAGTTAACTCTTCATATTCTTGGCTCTGATCTGACTGGTGGTTGCATGAACCCAGCTTCTGTGATGGGATGGGCTTATGCTCGCGGAGACCATATAACCAAGGAACATATTCTTGTTTATTGGCTTGCCCCAATAGAGGCAACTCTACTGGCAGTATGGACATTTAGGTTGCTATTTCCACCAAAAGAGGACAAGAAAGCTAAAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

232

Amino Acids

25.35

Weight (kDa)

9.49

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 19 - 216 6.8e-08 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 570
AciI CCGC 1 cut(s) 570
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 4 cut(s) 283, 338, 376, 622
AflIII ACRYGT 1 cut(s) 153
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 3 cut(s) 313, 542, 686
AluI AGCT 3 cut(s) 313, 542, 686
Alw26I GTCTC 2 cut(s) 347, 567
AlwI GGATC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 2 cut(s) 344, 445
AoxI GGCC 2 cut(s) 347, 378
ApaI GGGCCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 11, 266
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 2 cut(s) 455, 594
AspS9I GGNCC 3 cut(s) 347, 378, 379
AsuC2I CCSGG 2 cut(s) 446, 447
AsuHPI GGTGA 3 cut(s) 131, 202, 223
AvaI CYCGRG 2 cut(s) 344, 445
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 253
BccI CCATC 3 cut(s) 378, 544, 549
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 2 cut(s) 446, 447
BcoDI GTCTC 2 cut(s) 347, 567
BglII AGATCT 1 cut(s) 324
BisI GCNGC 2 cut(s) 12, 267
BlsI GCNGC 2 cut(s) 13, 268
Bme1390I CCNGG 3 cut(s) 333, 446, 447
BmeT110I CYCGRG 2 cut(s) 344, 445
BmgT120I GGNCC 3 cut(s) 347, 378, 379
BmiI GGNNCC 3 cut(s) 196, 379, 380
BmrFI CCNGG 3 cut(s) 333, 446, 447
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 460
BpuMI CCSGG 2 cut(s) 446, 447
BsaI GGTCTC 2 cut(s) 347, 567
BsaJI CCNNGG 4 cut(s) 186, 445, 446, 585
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 338, 376, 622
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 114, 526, 639
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 4 cut(s) 186, 445, 446, 585
BseGI GGATG 2 cut(s) 366, 560
BseLI CCNNNNNNNGG 4 cut(s) 283, 338, 376, 622
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 114, 526, 639
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 2 cut(s) 302, 538
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 2 cut(s) 349, 380
BshNI GGYRCC 1 cut(s) 194
BsiHKCI CYCGRG 2 cut(s) 344, 445
BsiSI CCGG 2 cut(s) 234, 446
BslI CCNNNNNNNGG 4 cut(s) 283, 338, 376, 622
BsmAI GTCTC 2 cut(s) 347, 567
BsnI GGCC 2 cut(s) 349, 380
Bso31I GGTCTC 2 cut(s) 347, 567
BsoBI CYCGRG 2 cut(s) 344, 445
Bsp120I GGGCCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 3 cut(s) 324, 471, 514
BspACI CCGC 1 cut(s) 570
BspANI GGCC 2 cut(s) 349, 380
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 570
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 3 cut(s) 196, 379, 380
BspPI GGATC 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 2 cut(s) 347, 567
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 114, 526, 639
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 186, 445, 446, 585
BssMI GATC 3 cut(s) 324, 471, 514
BssT1I CCWWGG 2 cut(s) 186, 585
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 3 cut(s) 214, 262, 361
Bst6I CTCTTC 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 21, 568, 612
BstDEI CTNAG 2 cut(s) 177, 282
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 366, 560
BstFNI CGCG 1 cut(s) 570
BstKTI GATC 3 cut(s) 327, 474, 517
BstMAI GTCTC 2 cut(s) 347, 567
BstMBI GATC 3 cut(s) 324, 471, 514
BstMWI GCNNNNNNNGC 3 cut(s) 20, 173, 243
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 331, 444, 445
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 324, 471
BstYI RGATCY 2 cut(s) 324, 471
BsuRI GGCC 2 cut(s) 349, 380
BtsCI GGATG 2 cut(s) 366, 560
BtsIMutI CAGTG 2 cut(s) 121, 258
Cac8I GCNNGC 3 cut(s) 21, 568, 612
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 347, 378, 379
Cfr9I CCCGGG 1 cut(s) 445
CseI GACGC 1 cut(s) 233
CviAII CATG 5 cut(s) 46, 154, 460, 468, 532
DdeI CTNAG 2 cut(s) 177, 282
DpnI GATC 3 cut(s) 326, 473, 516
DpnII GATC 3 cut(s) 324, 471, 514
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 186, 585
Eco24I GRGCYC 1 cut(s) 382
Eco31I GGTCTC 2 cut(s) 347, 567
Eco32I GATATC 1 cut(s) 124
Eco88I CYCGRG 2 cut(s) 344, 445
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoO109I RGGNCCY 2 cut(s) 378, 379
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 186, 585
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 2 cut(s) 186, 585
FaeI CATG 5 cut(s) 49, 157, 463, 471, 535
FatI CATG 5 cut(s) 45, 153, 459, 467, 531
Fnu4HI GCNGC 2 cut(s) 12, 267
FokI GGATG 2 cut(s) 353, 567
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 2 cut(s) 12, 267
GluI GCNGC 2 cut(s) 12, 267
GsaI CCCAGC 2 cut(s) 306, 542
HaeIII GGCC 2 cut(s) 349, 380
HapII CCGG 2 cut(s) 234, 446
HgaI GACGC 1 cut(s) 233
Hin1II CATG 5 cut(s) 49, 157, 463, 471, 535
HincII GTYRAC 2 cut(s) 364, 492
HindII GTYRAC 2 cut(s) 364, 492
HinfI GANTC 1 cut(s) 273
HpaI GTTAAC 1 cut(s) 492
HpaII CCGG 2 cut(s) 234, 446
HphI GGTGA 3 cut(s) 131, 202, 223
Hpy166II GTNNAC 2 cut(s) 364, 492
Hpy188I TCNGA 4 cut(s) 28, 223, 514, 519
Hpy188III TCNNGA 4 cut(s) 60, 73, 107, 460
Hpy8I GTNNAC 2 cut(s) 364, 492
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 214, 262, 361
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 407, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 173, 243
HpyF3I CTNAG 2 cut(s) 177, 282
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 5 cut(s) 49, 157, 463, 471, 535
KspAI GTTAAC 1 cut(s) 492
Kzo9I GATC 3 cut(s) 324, 471, 514
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 32
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 104, 412
MalI GATC 3 cut(s) 326, 473, 516
MboI GATC 3 cut(s) 324, 471, 514
MboII GAAGA 2 cut(s) 475, 488
MflI RGATCY 2 cut(s) 324, 471
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 1 cut(s) 77
MnlI CCTC 6 cut(s) 137, 149, 216, 368, 616, 667
MroXI GAANNNNTTC 2 cut(s) 455, 594
MseI TTAA 3 cut(s) 68, 309, 491
MslI CAYNNNNRTG 2 cut(s) 46, 152
MspI CCGG 2 cut(s) 234, 446
MspR9I CCNGG 3 cut(s) 333, 446, 447
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 20, 173, 243
NciI CCSGG 2 cut(s) 446, 447
NdeII GATC 3 cut(s) 324, 471, 514
NlaIII CATG 5 cut(s) 49, 157, 463, 471, 535
NlaIV GGNNCC 3 cut(s) 196, 379, 380
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 157
PagI TCATGA 1 cut(s) 459
PciI ACATGT 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 455, 594
PfeI GAWTC 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 2 cut(s) 13, 268
PscI ACATGT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 2 cut(s) 302, 538
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 196, 379, 380
PspOMI GGGCCC 1 cut(s) 378
PspPI GGNCC 3 cut(s) 347, 378, 379
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 2 cut(s) 324, 471
RseI CAYNNNNRTG 2 cut(s) 46, 152
SaqAI TTAA 3 cut(s) 68, 309, 491
SatI GCNGC 2 cut(s) 12, 267
Sau3AI GATC 3 cut(s) 324, 471, 514
Sau96I GGNCC 3 cut(s) 347, 378, 379
ScrFI CCNGG 3 cut(s) 333, 446, 447
SduI GDGCHC 1 cut(s) 382
SetI ASST 8 cut(s) 200, 288, 315, 343, 355, 544, 656, 688
SfaNI GCATC 1 cut(s) 32
SgrAI CRCCGGYG 1 cut(s) 233
SmaI CCCGGG 1 cut(s) 447
SmiMI CAYNNNNRTG 2 cut(s) 46, 152
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 570
StyD4I CCNGG 3 cut(s) 331, 444, 445
StyI CCWWGG 2 cut(s) 186, 585
TaaI ACNGT 3 cut(s) 214, 262, 361
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 373
TasI AATT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 3 cut(s) 68, 309, 491
Tru9I TTAA 3 cut(s) 68, 309, 491
TscAI CASTG 2 cut(s) 121, 265
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 11, 266
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 5 cut(s) 34, 448, 476, 488, 548
TspMI CCCGGG 1 cut(s) 445
TspRI CASTG 2 cut(s) 121, 265
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 157
XmaI CCCGGG 1 cut(s) 445
XmnI GAANNNNTTC 2 cut(s) 455, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.