Rorug02G0289600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004364
Physical Location & Seq
Forward (+)
31688151 .. 31690521
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0289600.1

Sequence Viewer

Length: 327 bp
ATGTCGTCTTGGAGAGGAAAGCGAAAGGACGAGGAGGACCACGCGTCCGACGGCGACTCTGAGGGCCACGCGCCCCCCAAAAAGACCGCTAAAAGAGACTCCTCCGACGACTCAGCCGAGGACATCGTCGTCTGCGAGATATCAAAGAACAGGAGGGTGACGGTCAGGAACTGGAACGGCAAGGTTATTGTGGACATTCGCGAGTTCTATGTCAAGGAGGGCAAGCAATTGCCTGGAAAGAAAGGAATCTCACTACCGATGGATCAGTGGAATGTTCTTCGGAGTCATGTGGACGAGATTGACAAGGTTGTTAACGAGACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04064 ko04140 ko04152 ko04214 ko04310 ko04380 ko04520 ko04620 ko04621 ko04622 ko04624 ko04657 ko04660 ko04668 ko05140 ko05145 ko05162 ko05168 ko05169 ko05418 map04010 map04013 map04064 map04140 map04152 map04214 map04310 map04380 map04520 map04620 map04621 map04622 map04624 map04657 map04660 map04668 map05140 map05145 map05162 map05168 map05169 map05418
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

6.3

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC4 PF02229 45 - 96 1.8e-26 Transcriptional Coactivator p15 (PC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccII CGCG 3 cut(s) 44, 71, 201
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 42
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 90, 311
AlwI GGATC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 37, 64
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 37
BccI CCATC 1 cut(s) 253
BceAI ACGGC 2 cut(s) 67, 193
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 90, 311
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 37
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 37, 64
BmrFI CCNGG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 176, 325
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 51, 126
BseNI ACTGG 2 cut(s) 176, 325
BseRI GAGGAG 2 cut(s) 47, 91
Bsh1236I CGCG 3 cut(s) 44, 71, 201
BshFI GGCC 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 90, 311
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 262
Bsp68I TCGCGA 1 cut(s) 201
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 52, 125
BspFNI CGCG 3 cut(s) 44, 71, 201
BspPI GGATC 1 cut(s) 270
BsrI ACTGG 2 cut(s) 176, 325
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 60, 112
BstFNI CGCG 3 cut(s) 44, 71, 201
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 90, 311
BstMBI GATC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 3 cut(s) 44, 71, 201
BsuRI GGCC 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 272
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 37, 64
CseI GACGC 1 cut(s) 33
CviAII CATG 1 cut(s) 287
CviJI RGCY 2 cut(s) 66, 116
CviKI_1 RGCY 2 cut(s) 66, 116
DdeI CTNAG 2 cut(s) 60, 112
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DrdI GACNNNNNNGTC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 128
Eam1105I GACNNNNNGTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 141
FaeI CATG 1 cut(s) 290
FaiI YATR 2 cut(s) 210, 288
FatI CATG 1 cut(s) 286
GlaI GCGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 66
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 5 cut(s) 56, 98, 110, 246, 283
HpaI GTTAAC 1 cut(s) 313
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 3 cut(s) 193, 292, 313
Hpy188I TCNGA 4 cut(s) 49, 61, 106, 282
Hpy188III TCNNGA 2 cut(s) 166, 200
Hpy8I GTNNAC 3 cut(s) 193, 292, 313
Hpy99I CGWCG 3 cut(s) 53, 110, 131
HpyCH4III ACNGT 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 60, 112
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 71
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 6 cut(s) 136, 151, 157, 219, 246, 306
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 269
MfeI CAATTG 1 cut(s) 227
MluCI AATT 1 cut(s) 227
MluI ACGCGT 1 cut(s) 42
MlyI GAGTC 4 cut(s) 50, 92, 104, 292
MmeI TCCRAC 2 cut(s) 72, 129
MnlI CCTC 8 cut(s) 8, 25, 28, 55, 112, 112, 147, 211
MseI TTAA 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 3 cut(s) 44, 71, 201
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 157
NruI TCGCGA 1 cut(s) 201
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 132
PfeI GAWTC 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 125
PleI GAGTC 4 cut(s) 50, 92, 104, 291
PpsI GAGTC 4 cut(s) 50, 92, 104, 291
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 2 cut(s) 37, 64
PstNI CAGNNNCTG 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 125
RruI TCGCGA 1 cut(s) 201
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 37, 64
SchI GAGTC 4 cut(s) 50, 92, 104, 292
ScrFI CCNGG 1 cut(s) 234
SetI ASST 2 cut(s) 186, 309
SinI GGWCC 1 cut(s) 37
Sse9I AATT 1 cut(s) 227
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 163
TasI AATT 1 cut(s) 227
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspRI CASTG 1 cut(s) 272
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.