Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005105

Physical Location & Seq

Genomic Coordinates Forward (+)

51944232 .. 51944592

Gene Structure 361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCCTTTCTCAATCACAGTCGTCGCAGCGCCACTGCTACAACATTTCGATGAATCCCTTATTCTTCCCTGCTTCCTCCCTTTCCACTCCTGGATTTGTAGCGATTACCGCGTCTTCGAGGATGAGATCCTCAAGACCAGTGGCCTCGATGCCCTCATCATCATCAGGCTTTTTTTTTTTTTTTGTCTGAATCATCAGGCTCTTCAAGATGGGCTTGCCATCCTTTTCCTGGTTGTGGATCTTGTAGGTGGGCAAAGATGGAGAGAAGAAGGCGAATTTGGCTGTGAAGGTAGAGCACATGCACCCGATTCACAAAACCTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

108

Amino Acids

12.3

Weight (kDa)

4.63

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54510 AT3G54510 AT3G54510 AT3G54510 AT3G54510 AT3G54510
fragaria_vesca	FvH4_7g02530 FvH4_7g02530
malus_domestica	MD02G1292300.v1.1 MD02G1292500.v1.1 MD07G1034300.v1.1
prunus_persica	Prupe.2G030700_v2.0.a1
pyrus_communis	pycom02g24720 pycom07g02420
rosa_chinensis	RchiOBHm_Chr1g0321171 RchiOBHm_Chr2g0134811
rosa_laevigata	RLG00000030434
rosa_multiflora	Rmu_co8459053.1_g000001 Rmu_sc0001399.1_g000001 Rmu_sc0004660.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433760 Rroxscaffold_4G00328050
rosa_rugosa	Rorug01G0031800 Rorug01G0031800
rosa_samantha	Rh1AG043600 Rh1BG040800 Rh1CG045900 Rh1DG050700 Rh7BG448400
rosa_wichuraiana	Rw1G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	2 cut(s)	121, 246
AcsI	RAATTY	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	229, 235
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	89, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	121, 246
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	3 cut(s)	203, 227, 252
BciT130I	CCWGG	2 cut(s)	91, 230
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	91, 230
BmrFI	CCNGG	2 cut(s)	91, 230
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 235
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	91, 230
BseGI	GGATG	2 cut(s)	127, 219
BseLI	CCNNNNNNNGG	2 cut(s)	229, 235
BseNI	ACTGG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	229, 235
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	126, 238
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	2 cut(s)	121, 246
BspQI	GCTCTTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	126, 238
Bst2UI	CCWGG	2 cut(s)	91, 230
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	127, 219
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	129, 241
BstMBI	GATC	2 cut(s)	126, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 279
BstNI	CCWGG	2 cut(s)	91, 230
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	89, 228
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	126, 238
BstYI	RGATCY	2 cut(s)	126, 238
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	127, 219
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 145
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	31
CseI	GACGC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	5 cut(s)	144, 169, 200, 214, 282
CviKI_1	RGCY	5 cut(s)	144, 169, 200, 214, 282
DpnI	GATC	2 cut(s)	128, 240
DpnII	GATC	2 cut(s)	126, 238
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	89, 228
FaeI	CATG	1 cut(s)	302
FaiI	YATR	1 cut(s)	300
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	134, 206
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	144
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	53, 190, 308
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	133, 206
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	263, 281
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 279
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	126, 238
LguI	GCTCTTC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	76, 82, 103, 151, 151, 182, 215, 242
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	320
MalI	GATC	2 cut(s)	128, 240
MboI	GATC	2 cut(s)	126, 238
MboII	GAAGA	4 cut(s)	56, 106, 194, 278
MflI	RGATCY	2 cut(s)	126, 238
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	5 cut(s)	86, 112, 140, 155, 164
MslI	CAYNNNNRTG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	91, 230
MvaI	CCWGG	2 cut(s)	91, 230
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	108, 279
NdeII	GATC	2 cut(s)	126, 238
NlaIII	CATG	1 cut(s)	302
NspI	RCATGY	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	53, 190, 308
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	89, 228
PspGI	CCWGG	2 cut(s)	89, 228
PsuI	RGATCY	2 cut(s)	126, 238
RseI	CAYNNNNRTG	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	126, 238
ScrFI	CCNGG	2 cut(s)	91, 230
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	3 cut(s)	250, 292, 321
SfaNI	GCATC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	89, 228
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	48, 117, 147
TasI	AATT	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	53, 190, 308
TscAI	CASTG	2 cut(s)	39, 145
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	39, 145
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.