Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004660.1

Orthogroup ID

OG0005105

Physical Location & Seq

Genomic Coordinates Forward (+)

53304 .. 54181

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004660.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgggaaagaaacataatgagacgcctttgctctctaatcattctcatcaagatgctgctaaattagcttcacatgaggaaaagcttgaagaacttcatcataagatacaccagttacagtctgaaaatatgcttaaagaaaaggagttacctgttgcttttgttacattcaagtctcggtggggtgcagcattagtttcccaatctcagcagcatgcagatccacttctttggataactgacatggctccagaaccgagggatgtatcttggagaaatctggtgataccatacagagttttgccactttgcaggctaggtgtcattgttgcagcctctcttcttacaattttctttgcaatcccagtcactgctgtccagggtatagccaagtttgagaaactgaaaaaatggtttcctccagccatggctttacagttgatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

148

Amino Acids

16.82

Weight (kDa)

9.1

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54510 AT3G54510 AT3G54510 AT3G54510 AT3G54510 AT3G54510
fragaria_vesca	FvH4_7g02530 FvH4_7g02530
malus_domestica	MD02G1292300.v1.1 MD02G1292500.v1.1 MD07G1034300.v1.1
prunus_persica	Prupe.2G030700_v2.0.a1
pyrus_communis	pycom02g24720 pycom07g02420
rosa_chinensis	RchiOBHm_Chr1g0321171 RchiOBHm_Chr2g0134811
rosa_laevigata	RLG00000030434
rosa_multiflora	Rmu_co8459053.1_g000001 Rmu_sc0001399.1_g000001 Rmu_sc0004660.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433760 Rroxscaffold_4G00328050
rosa_rugosa	Rorug01G0031800 Rorug01G0031800
rosa_samantha	Rh1AG043600 Rh1BG040800 Rh1CG045900 Rh1DG050700 Rh7BG448400
rosa_wichuraiana	Rw1G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	89, 172
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	68, 85
AluI	AGCT	2 cut(s)	68, 85
Alw26I	GTCTC	2 cut(s)	14, 180
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	4 cut(s)	56, 188, 211, 332
Asp700I	GAANNNNTTC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	295
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BbvI	GCAGC	4 cut(s)	43, 200, 223, 344
BciT130I	CCWGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	14, 180
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	4 cut(s)	57, 189, 212, 333
BlsI	GCNGC	4 cut(s)	58, 190, 213, 334
Bme1390I	CCNGG	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	234, 405
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	257, 379, 426
Bse1I	ACTGG	2 cut(s)	112, 365
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	257, 379, 426
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	112, 365
BseXI	GCAGC	4 cut(s)	43, 200, 223, 344
BsgI	GTGCAG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	14, 180
BsmBI	CGTCTC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	112, 365
BssECI	CCNNGG	3 cut(s)	257, 379, 426
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	120, 438
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	216, 314
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	14, 180
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	43, 200, 223, 344
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	216, 314
CaiI	CAGNNNCTG	1 cut(s)	371
CseI	GACGC	1 cut(s)	31
CviAII	CATG	4 cut(s)	74, 215, 244, 427
CviJI	RGCY	8 cut(s)	68, 85, 248, 316, 335, 389, 425, 431
CviKI_1	RGCY	8 cut(s)	68, 85, 248, 316, 335, 389, 425, 431
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	4 cut(s)	77, 218, 247, 430
FaiI	YATR	9 cut(s)	15, 75, 102, 131, 216, 245, 292, 386, 428
FatI	CATG	4 cut(s)	73, 214, 243, 426
Fnu4HI	GCNGC	4 cut(s)	57, 189, 212, 333
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	4 cut(s)	57, 189, 212, 333
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	4 cut(s)	57, 189, 212, 333
GsuI	CTGGAG	2 cut(s)	234, 405
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	77, 218, 247, 430
HindIII	AAGCTT	1 cut(s)	83
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	50, 251
HpyCH4III	ACNGT	2 cut(s)	120, 438
HpyCH4V	TGCA	5 cut(s)	188, 218, 312, 332, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	77, 218, 247, 430
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	125, 165, 264, 266, 298, 365, 378, 392, 435
Lsp1109I	GCAGC	4 cut(s)	43, 200, 223, 344
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	4 cut(s)	114, 147, 163, 367
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	101, 332
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	2 cut(s)	62, 348
MnlI	CCTC	4 cut(s)	70, 252, 346, 429
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	77, 218, 247, 430
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	93
PkrI	GCNGC	4 cut(s)	58, 190, 213, 334
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	4 cut(s)	57, 189, 212, 333
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	4 cut(s)	70, 87, 154, 322
SfaNI	GCATC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	62, 348
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	120, 438
TasI	AATT	2 cut(s)	62, 348
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	56, 188, 211, 332
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	376
XceI	RCATGY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.