Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001399.1

Orthogroup ID

OG0005105

Physical Location & Seq

Genomic Coordinates Reverse (-)

1308 .. 4024

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgaaccctgaaagtctgatagcttcggcggccataaacataggcctggccatcgtgattctctcactcttctccatcctgaagaagcaaccctcgtacgcccctatctactaccctcgccgcctctctcagtcgcagtcatcgcagccgtcgcagcgccaccgccacaacattccggatttcgatgaagccttcactgtccgccgcttcctcccttccctctcctggattcgccgcgcctgccgcgtctccgaggatgagatcctcgagaccagtggcctcgacgccctcatcatcatcaggctcttcaagtttgggtcagtaacactcatggctttcatttcggaatataatgagattttgtctaaaaggattcaacaacttcgtaacattaggcatcagcctgatcagttcactgttctagtccgggaaattcccttctgtaatgatcacagatctcgcggatgttgtgttgataaattcttctctaagcatcatccatatgcttatcattcttatcagattttgtacgatggaaaagaatttcaggagttgctggtaaggcttccacattctaaggtcattctctgtatatcaatatcagcactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

203

Amino Acids

23.55

Weight (kDa)

9.3

Isoelectric Point (pI)

71.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54510 AT3G54510 AT3G54510 AT3G54510 AT3G54510 AT3G54510
fragaria_vesca	FvH4_7g02530 FvH4_7g02530
malus_domestica	MD02G1292300.v1.1 MD02G1292500.v1.1 MD07G1034300.v1.1
prunus_persica	Prupe.2G030700_v2.0.a1
pyrus_communis	pycom02g24720 pycom07g02420
rosa_chinensis	RchiOBHm_Chr1g0321171 RchiOBHm_Chr2g0134811
rosa_laevigata	RLG00000030434
rosa_multiflora	Rmu_co8459053.1_g000001 Rmu_sc0001399.1_g000001 Rmu_sc0004660.1_g000011
rosa_roxburghii	Rroxscaffold_160G00433760 Rroxscaffold_4G00328050
rosa_rugosa	Rorug01G0031800 Rorug01G0031800
rosa_samantha	Rh1AG043600 Rh1BG040800 Rh1CG045900 Rh1DG050700 Rh7BG448400
rosa_wichuraiana	Rw1G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	237, 246, 462
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	8 cut(s)	29, 121, 163, 202, 205, 235, 244, 462
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	2 cut(s)	30, 48
AcsI	RAATTY	3 cut(s)	432, 479, 542
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	98, 530
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	310, 377
AjnI	CCWGG	2 cut(s)	45, 224
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	253, 263
AlwI	GGATC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	4 cut(s)	30, 43, 48, 277
ApeKI	GCWGC	2 cut(s)	145, 154
ApoI	RAATTY	3 cut(s)	432, 479, 542
AspLEI	GCGC	2 cut(s)	159, 239
AsuC2I	CCSGG	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	157, 166
BccI	CCATC	3 cut(s)	59, 83, 527
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	47, 226
BclI	TGATCA	2 cut(s)	406, 448
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	253, 263
BfaI	CTAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	160
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	7 cut(s)	30, 121, 146, 155, 205, 235, 244
BlsI	GCNGC	7 cut(s)	31, 122, 147, 156, 206, 236, 245
Bme1390I	CCNGG	3 cut(s)	47, 226, 428
BmeT110I	CYCGRG	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	47, 226, 428
BmsI	GCATC	2 cut(s)	406, 502
BpuMI	CCSGG	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	47, 226
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	4 cut(s)	75, 262, 470, 496
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	157, 166
Bsh1236I	CGCG	3 cut(s)	237, 246, 462
BshFI	GGCC	4 cut(s)	32, 45, 50, 279
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	176, 427
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	253, 263
BsmBI	CGTCTC	1 cut(s)	253
BsnI	GGCC	4 cut(s)	32, 45, 50, 279
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	261, 406, 448, 455
BspACI	CCGC	8 cut(s)	29, 121, 163, 202, 205, 235, 244, 462
BspANI	GGCC	4 cut(s)	32, 45, 50, 279
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	3 cut(s)	237, 246, 462
BspPI	GGATC	1 cut(s)	256
BspQI	GCTCTTC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	261, 406, 448, 455
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	47, 226
Bst4CI	ACNGT	2 cut(s)	199, 418
Bst6I	CTCTTC	2 cut(s)	74, 311
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	129, 489, 576
BstF5I	GGATG	4 cut(s)	75, 262, 470, 496
BstFNI	CGCG	3 cut(s)	237, 246, 462
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	159, 239
BstKTI	GATC	4 cut(s)	264, 409, 451, 458
BstMAI	GTCTC	2 cut(s)	253, 263
BstMBI	GATC	4 cut(s)	261, 406, 448, 455
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 142, 151, 154, 240, 243, 562
BstNI	CCWGG	2 cut(s)	47, 226
BstSCI	CCNGG	3 cut(s)	45, 224, 426
BstUI	CGCG	3 cut(s)	237, 246, 462
BstV1I	GCAGC	2 cut(s)	157, 166
BstX2I	RGATCY	2 cut(s)	261, 455
BstYI	RGATCY	2 cut(s)	261, 455
BsuRI	GGCC	4 cut(s)	32, 45, 50, 279
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	75, 262, 470, 496
BtsIMutI	CAGTG	3 cut(s)	195, 280, 414
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	159, 239
CseI	GACGC	2 cut(s)	235, 293
Csp6I	GTAC	2 cut(s)	97, 529
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	2 cut(s)	97, 529
DdeI	CTNAG	3 cut(s)	129, 489, 576
DpnI	GATC	4 cut(s)	263, 408, 450, 457
DpnII	GATC	4 cut(s)	261, 406, 448, 455
EaeI	YGGCCR	2 cut(s)	30, 48
Eam1104I	CTCTTC	2 cut(s)	74, 311
EarI	CTCTTC	2 cut(s)	74, 311
EciI	GGCGGA	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	45, 224
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	35, 41, 332, 351, 502, 504, 593, 610
FatI	CATG	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	2 cut(s)	406, 448
Fnu4HI	GCNGC	7 cut(s)	30, 121, 146, 155, 205, 235, 244
FokI	GGATG	4 cut(s)	62, 269, 477, 483
Fsp4HI	GCNGC	7 cut(s)	30, 121, 146, 155, 205, 235, 244
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	158, 238
GluI	GCNGC	7 cut(s)	30, 121, 146, 155, 205, 235, 244
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	4 cut(s)	32, 45, 50, 279
HapII	CCGG	2 cut(s)	176, 427
HgaI	GACGC	2 cut(s)	235, 293
HhaI	GCGC	2 cut(s)	159, 239
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	2 cut(s)	157, 237
HinP1I	GCGC	2 cut(s)	157, 237
HinfI	GANTC	3 cut(s)	58, 229, 373
HpaII	CCGG	2 cut(s)	176, 427
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	4 cut(s)	18, 253, 346, 522
Hpy188III	TCNNGA	5 cut(s)	55, 79, 176, 268, 548
Hpy8I	GTNNAC	1 cut(s)	414
Hpy99I	CGWCG	2 cut(s)	154, 287
HpyAV	CCTTC	3 cut(s)	202, 225, 448
HpyCH4III	ACNGT	2 cut(s)	199, 418
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 142, 151, 154, 240, 243, 562
HpyF3I	CTNAG	3 cut(s)	129, 489, 576
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	2 cut(s)	157, 237
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	406, 448
Kzo9I	GATC	4 cut(s)	261, 406, 448, 455
LguI	GCTCTTC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	157, 166
LweI	GCATC	2 cut(s)	406, 502
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	322, 386
MalI	GATC	4 cut(s)	263, 408, 450, 457
MboI	GATC	4 cut(s)	261, 406, 448, 455
MboII	GAAGA	4 cut(s)	61, 94, 298, 475
MflI	RGATCY	2 cut(s)	261, 455
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	432, 479, 542
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	9 cut(s)	103, 126, 134, 221, 230, 247, 275, 290, 299
Mox20I	TGGCCA	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	2 cut(s)	176, 427
MspR9I	CCNGG	3 cut(s)	47, 226, 428
MvaI	CCWGG	2 cut(s)	47, 226
MvnI	CGCG	3 cut(s)	237, 246, 462
MwoI	GCNNNNNNNGC	7 cut(s)	29, 142, 151, 154, 240, 243, 562
NciI	CCSGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	4 cut(s)	261, 406, 448, 455
NlaIII	CATG	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	58, 229, 373
Pfl23II	CGTACG	1 cut(s)	96
PfoI	TCCNGGA	2 cut(s)	224, 426
PkrI	GCNGC	7 cut(s)	31, 122, 147, 156, 206, 236, 245
Psp6I	CCWGG	2 cut(s)	45, 224
PspGI	CCWGG	2 cut(s)	45, 224
PspLI	CGTACG	1 cut(s)	96
PsuI	RGATCY	2 cut(s)	261, 455
RsaI	GTAC	2 cut(s)	98, 530
RsaNI	GTAC	2 cut(s)	97, 529
RseI	CAYNNNNRTG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	311
SatI	GCNGC	7 cut(s)	30, 121, 146, 155, 205, 235, 244
Sau3AI	GATC	4 cut(s)	261, 406, 448, 455
ScrFI	CCNGG	3 cut(s)	47, 226, 428
SetI	ASST	2 cut(s)	25, 582
SfaNI	GCATC	2 cut(s)	406, 502
Sfr274I	CTCGAG	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	432, 479, 542
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	8 cut(s)	29, 121, 163, 202, 205, 235, 244, 462
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	45, 224, 426
TaaI	ACNGT	2 cut(s)	199, 418
TaqI	TCGA	3 cut(s)	183, 267, 282
TasI	AATT	3 cut(s)	432, 479, 542
TauI	GCSGC	5 cut(s)	32, 123, 207, 237, 246
TfiI	GAWTC	3 cut(s)	58, 229, 373
TscAI	CASTG	3 cut(s)	202, 280, 421
TseI	GCWGC	2 cut(s)	145, 154
TspDTI	ATGAA	3 cut(s)	17, 201, 328
TspRI	CASTG	3 cut(s)	202, 280, 421
XapI	RAATTY	3 cut(s)	432, 479, 542
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.