RchiOBHm_Chr2g0149511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018962
Physical Location & Seq
Forward (+)
67352189 .. 67352806
618 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51891

Sequence Viewer

Length: 549 bp
ATGGCGTTGCTGGTTAGTGGTGGGTCTTCAGGGCAGAGACTCGGCCCAGGGGAGGAGGGTGGGTTCTTGATCTCGGGATGGGTAGATCTCTCGATCGGTCCCTCTCGGATCAGGGGCGACAGCGGTTGTGGGGATGCAGCACCTTGTTTCTGGCCGGCGGTGGGAGTTGGCATCATCACAGAAGCTATCTGGGGTATGGTGGATGAGGGCAATTCACGGCAGGAGGGTTCCTGGTTGGGCTCTGTTTCTGTCGGGTTTCTGGATCTGGTTGCGGTGTCAATTGGGTGTAGAATTTGTCTGCATATTGGCACGGTGGAGCAGTGGAATCGGGAGGCGGCGAGGCCGTGCAGGGGTGGCATTGATGGTGCTTGCCGGCGGCTGGATTGGGTTTCTGCATTGGTGGAGTACTGCTCGGGGAAGTGGGTGTTGGATCGGGCCCCTGTTTTTGGGCCTTGGTGGTGTTTAATAAGTCCCTACTCTTCTGAGCTAGGGTGGGTCTCCTACTCTGTTGAGTTAGGAGTTGGTCTAGGTGTTCGGCCATGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.3

Weight (kDa)

4.99

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 123, 158, 272, 335, 376
AclWI GGATC 3 cut(s) 116, 270, 438
AcoI YGGCCR 2 cut(s) 152, 536
AcsI RAATTY 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 5 cut(s) 52, 161, 350, 379, 446
AjnI CCWGG 2 cut(s) 46, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 185, 487
AluI AGCT 2 cut(s) 185, 487
Alw26I GTCTC 2 cut(s) 31, 502
AlwI GGATC 3 cut(s) 116, 270, 438
Ama87I CYCGRG 2 cut(s) 73, 412
AoxI GGCC 6 cut(s) 43, 152, 341, 435, 449, 536
ApaI GGGCCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 5 cut(s) 44, 98, 435, 436, 449
AvaI CYCGRG 2 cut(s) 73, 412
AvaII GGWCC 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 2 cut(s) 242, 439
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 72, 356
BceAI ACGGC 2 cut(s) 233, 328
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 48, 232
BcoDI GTCTC 2 cut(s) 31, 502
BfaI CTAG 2 cut(s) 488, 527
BglII AGATCT 1 cut(s) 85
BisI GCNGC 3 cut(s) 138, 336, 377
BlsI GCNGC 3 cut(s) 139, 337, 378
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 48, 232
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 2 cut(s) 73, 412
BmgT120I GGNCC 5 cut(s) 44, 98, 435, 436, 449
BmiI GGNNCC 4 cut(s) 100, 229, 437, 438
BmrFI CCNGG 2 cut(s) 48, 232
BmsI GCATC 2 cut(s) 124, 180
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 3 cut(s) 46, 47, 452
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 161, 350, 379, 446
Bse118I RCCGGY 2 cut(s) 154, 372
BseBI CCWGG 2 cut(s) 48, 232
BseDI CCNNGG 3 cut(s) 46, 47, 452
BseGI GGATG 3 cut(s) 83, 139, 208
BseLI CCNNNNNNNGG 5 cut(s) 52, 161, 350, 379, 446
BseMII CTCAG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 6 cut(s) 45, 154, 343, 437, 451, 538
BsiEI CGRYCG 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 73, 412
BsiSI CCGG 2 cut(s) 155, 373
BslFI GGGAC 2 cut(s) 84, 456
BslI CCNNNNNNNGG 5 cut(s) 52, 161, 350, 379, 446
BsmAI GTCTC 2 cut(s) 31, 502
BsmFI GGGAC 2 cut(s) 84, 456
BsnI GGCC 6 cut(s) 45, 154, 343, 437, 451, 538
Bso31I GGTCTC 1 cut(s) 502
BsoBI CYCGRG 2 cut(s) 73, 412
Bsp120I GGGCCC 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 242, 439
Bsp143I GATC 6 cut(s) 69, 85, 93, 108, 262, 430
BspACI CCGC 5 cut(s) 123, 158, 272, 335, 376
BspANI GGCC 6 cut(s) 45, 154, 343, 437, 451, 538
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 4 cut(s) 100, 229, 437, 438
BspPI GGATC 3 cut(s) 116, 270, 438
BspTNI GGTCTC 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 154, 372
BssAI RCCGGY 2 cut(s) 154, 372
BssECI CCNNGG 3 cut(s) 46, 47, 452
BssMI GATC 6 cut(s) 69, 85, 93, 108, 262, 430
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 48, 232
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 156, 370, 374
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 83, 139, 208
BstKTI GATC 6 cut(s) 72, 88, 96, 111, 265, 433
BstMAI GTCTC 2 cut(s) 31, 502
BstMBI GATC 6 cut(s) 69, 85, 93, 108, 262, 430
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 2 cut(s) 48, 232
BstSCI CCNGG 2 cut(s) 46, 230
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 85, 262
BstYI RGATCY 2 cut(s) 85, 262
BsuRI GGCC 6 cut(s) 45, 154, 343, 437, 451, 538
BtsCI GGATG 3 cut(s) 83, 139, 208
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 3 cut(s) 156, 370, 374
Cfr10I RCCGGY 2 cut(s) 154, 372
Cfr13I GGNCC 5 cut(s) 44, 98, 435, 436, 449
Csp6I GTAC 1 cut(s) 406
CviAII CATG 1 cut(s) 540
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 483
DpnI GATC 6 cut(s) 71, 87, 95, 110, 264, 432
DpnII GATC 6 cut(s) 69, 85, 93, 108, 262, 430
EaeI YGGCCR 2 cut(s) 152, 536
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 452
Eco24I GRGCYC 2 cut(s) 242, 439
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 12
Eco88I CYCGRG 2 cut(s) 73, 412
EcoO109I RGGNCCY 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 46, 230
EcoT14I CCWWGG 1 cut(s) 452
EcoT38I GRGCYC 2 cut(s) 242, 439
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 1 cut(s) 543
FaiI YATR 3 cut(s) 197, 303, 541
FaqI GGGAC 2 cut(s) 84, 456
FatI CATG 1 cut(s) 539
Fnu4HI GCNGC 3 cut(s) 138, 336, 377
FokI GGATG 3 cut(s) 90, 146, 215
FriOI GRGCYC 2 cut(s) 242, 439
Fsp4HI GCNGC 3 cut(s) 138, 336, 377
FspBI CTAG 2 cut(s) 488, 527
GluI GCNGC 3 cut(s) 138, 336, 377
HaeIII GGCC 6 cut(s) 45, 154, 343, 437, 451, 538
HapII CCGG 2 cut(s) 155, 373
Hin1II CATG 1 cut(s) 543
HinfI GANTC 2 cut(s) 39, 325
HpaII CCGG 2 cut(s) 155, 373
Hpy188I TCNGA 2 cut(s) 108, 484
Hpy188III TCNNGA 5 cut(s) 67, 75, 91, 260, 329
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 137, 301, 348, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 1 cut(s) 483
Hsp92II CATG 1 cut(s) 543
KroI GCCGGC 2 cut(s) 154, 372
KroNI GCCGGC 2 cut(s) 156, 374
Kzo9I GATC 6 cut(s) 69, 85, 93, 108, 262, 430
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 2 cut(s) 124, 180
MaeI CTAG 2 cut(s) 488, 527
MalI GATC 6 cut(s) 71, 87, 95, 110, 264, 432
MboI GATC 6 cut(s) 69, 85, 93, 108, 262, 430
MboII GAAGA 2 cut(s) 18, 471
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 85, 262
MhlI GDGCHC 2 cut(s) 242, 439
MluCI AATT 3 cut(s) 211, 279, 291
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 7 cut(s) 46, 49, 112, 199, 217, 325, 333
MroNI GCCGGC 2 cut(s) 154, 372
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 544
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 2 cut(s) 155, 373
MspR9I CCNGG 2 cut(s) 48, 232
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 2 cut(s) 48, 232
MwoI GCNNNNNNNGC 1 cut(s) 354
NaeI GCCGGC 2 cut(s) 156, 374
NdeII GATC 6 cut(s) 69, 85, 93, 108, 262, 430
NgoMIV GCCGGC 2 cut(s) 154, 372
NlaIII CATG 1 cut(s) 543
NlaIV GGNNCC 4 cut(s) 100, 229, 437, 438
NmeAIII GCCGAG 1 cut(s) 21
PasI CCCWGGG 1 cut(s) 47
PdiI GCCGGC 2 cut(s) 156, 374
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 3 cut(s) 139, 337, 378
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 46, 230
PspGI CCWGG 2 cut(s) 46, 230
PspN4I GGNNCC 4 cut(s) 100, 229, 437, 438
PspOMI GGGCCC 1 cut(s) 435
PspPI GGNCC 5 cut(s) 44, 98, 435, 436, 449
PsuI RGATCY 2 cut(s) 85, 262
PvuI CGATCG 1 cut(s) 96
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 544
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 3 cut(s) 138, 336, 377
Sau3AI GATC 6 cut(s) 69, 85, 93, 108, 262, 430
Sau96I GGNCC 5 cut(s) 44, 98, 435, 436, 449
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 48, 232
SduI GDGCHC 2 cut(s) 242, 439
SetI ASST 4 cut(s) 145, 187, 489, 532
SfaNI GCATC 2 cut(s) 124, 180
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 544
Sse9I AATT 3 cut(s) 211, 279, 291
SsiI CCGC 5 cut(s) 123, 158, 272, 335, 376
SspMI CTAG 2 cut(s) 488, 527
StyD4I CCNGG 2 cut(s) 46, 230
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 86
TasI AATT 3 cut(s) 211, 279, 291
TatI WGTACW 1 cut(s) 405
TauI GCSGC 2 cut(s) 338, 379
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 326
TseI GCWGC 1 cut(s) 137
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 291
XspI CTAG 2 cut(s) 488, 527
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.