Rmu_sc0004898.1_g000008

heme binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004898.1
OG0018962
Physical Location & Seq
Forward (+)
29824 .. 36383
6560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004898.1_g000008.1.cds

Sequence Viewer

Length: 1722 bp
atgattctagctgtggtggcattgcttctgtgtgtctttttaggagctttcgttctgatcccatctgggaatacaaaaaacgttaagtcaaatgctaaagctgacaagacagccaagatatactctaaagctgaggtttctttgcataataaacgaacagattgttgggtgattatcaaaaacaaggtgtatgaccttacaccatatgtagaggtacacccgggtggtgatgccatcctcgcacacgctggggatgattcaactgttgggttttatgggccacagcatgctagcttagtctatgatatggttcacgaattctatattggagatctggagcctggagccagtagaaggaaaacccggtgtagttcgtttctcttccggccgagcgccaccggcgttccagcccgggaggggatggcgttgctggttagtggtgggtcttcaaggcggagacgcagtccaggggaggagggtgggttcttgatctcgggatgggtagatctctcgatcggtccctctcgaatcaggggcggcagcggttgtggggatgcagcaacttgtctctggtcggcggtaggagttggcgtcatcaaagaagcaatctgtgttatggtggatgtgggcaatttacggcagcagggatcctggttggactctgtttctgttgggtttctggatctggttgcgatgtcaattgggtgtagaatttgtctgcatattggcacggtggagcggcggtatcggaaggcggcgaggctgtggggtggcgttgatggtgcttgccgaaggcgggattgggtttctgcattggtggagtactgctcggggaacactatcggacgcggtgttgaagaggacgctgccttcttagtggttgattataagattttactggaattttcgggaaaagtagatgaggacattcatagaatggtcaagacatatgacgtcaaaaggatacacaaaataacttgtgaagatgtagctatctgccttggaatgccattagaaggagtcacattagagctaaacaagcaccaccagaagccaacaaagaatcggatgatcgacaagtattttggagatgcaaagaaagtgacaaaagcgatgatcgatagtgcacttgccgaatctttgatagacccaaagaatcaagtcccaagtgagttggcatcactaatcatcataaatctgtttgtatccttcttgttctgcacctcaagttctacattgtcttggaagttggtagaaattggcaccgaatggaattcttggcgacgatattcatgggcgaccttggtattagaccatctgcacaatggtctaagtaagaagcaggaagacaaagatgtcaatttgtcagatggtgaggaagagggaggagaaggagatgatggtgaagatggttatgaagagggtggagaaggagctaatggtgaagatggtggagacgatgatgaagacaaagaagaagaacctaaagtgagaacaaccagaaagaagtacacagcagcaagaaaagataaaagaggcaggtcttctcagaaacaggaagcaaagaaacaatcaaggagaagggaaagggtgaaaaaagctgctgctgaagaagaacctgaagaagaacccattaaaaagatgaagaaagggaagaagcaagctgtaaagagaaattcaatggtggatcgaatcaagaacaaaaaaaaggaaggatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

573

Amino Acids

63.34

Weight (kDa)

8.49

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AasI GACNNNNNNGTC 1 cut(s) 1355
AatII GACGTC 1 cut(s) 957
Acc36I ACCTGC 1 cut(s) 1530
AccB1I GGYRCC 1 cut(s) 1262
AccBSI CCGCTC 1 cut(s) 739
AccII CGCG 1 cut(s) 849
AciI CCGC 9 cut(s) 454, 537, 543, 578, 739, 742, 755, 796, 849
AclI AACGTT 1 cut(s) 81
AclWI GGATC 5 cut(s) 52, 642, 655, 690, 1695
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 5 cut(s) 317, 711, 902, 1273, 1675
AcuI CTGAAG 2 cut(s) 1629, 1641
AcyI GRCGYC 2 cut(s) 591, 954
AfaI GTAC 3 cut(s) 216, 824, 1511
AfiI CCNNNNNNNGG 4 cut(s) 354, 417, 796, 1016
AgsI TTSAA 4 cut(s) 261, 450, 857, 1680
AjnI CCWGG 3 cut(s) 340, 466, 650
AjuI GAANNNNNNNTTGG 6 cut(s) 148, 180, 309, 341, 784, 816
AleI CACNNNNGTG 1 cut(s) 222
AloI GAACNNNNNNTCC 4 cut(s) 36, 68, 467, 499
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 3 cut(s) 451, 572, 1449
Alw44I GTGCAC 1 cut(s) 1125
AlwI GGATC 5 cut(s) 52, 642, 655, 690, 1695
Ama87I CYCGRG 4 cut(s) 220, 411, 493, 829
AoxI GGCC 2 cut(s) 278, 386
ApaLI GTGCAC 1 cut(s) 1125
ApeKI GCWGC 7 cut(s) 540, 557, 640, 866, 1517, 1601, 1604
ApoI RAATTY 5 cut(s) 317, 711, 902, 1273, 1675
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 278, 518
AsuC2I CCSGG 5 cut(s) 221, 222, 364, 412, 413
AsuHPI GGTGA 6 cut(s) 181, 239, 1385, 1415, 1454, 1603
AsuNHI GCTAGC 1 cut(s) 290
AvaI CYCGRG 4 cut(s) 220, 411, 493, 829
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 1129
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 1262
BbsI GAAGAC 4 cut(s) 438, 1353, 1473, 1536
Bbv12I GWGCWC 1 cut(s) 1129
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 7 cut(s) 552, 569, 652, 853, 1529, 1588, 1591
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 3 cut(s) 342, 468, 652
BciVI GTATCC 3 cut(s) 957, 1216, 1709
BcnI CCSGG 5 cut(s) 221, 222, 364, 412, 413
BcoDI GTCTC 3 cut(s) 451, 572, 1449
BfaI CTAG 2 cut(s) 8, 291
BfoI RGCGCY 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 1530
BfuI GTATCC 3 cut(s) 957, 1216, 1709
BglII AGATCT 2 cut(s) 331, 505
BmcAI AGTACT 1 cut(s) 824
Bme1390I CCNGG 8 cut(s) 221, 222, 342, 364, 412, 413, 468, 652
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 4 cut(s) 220, 411, 493, 829
BmgT120I GGNCC 2 cut(s) 278, 518
BmiI GGNNCC 5 cut(s) 339, 346, 520, 649, 1264
BmrFI CCNGG 8 cut(s) 221, 222, 342, 364, 412, 413, 468, 652
BmsI GCATC 4 cut(s) 220, 544, 1081, 1187
BmtI GCTAGC 1 cut(s) 294
BpiI GAAGAC 4 cut(s) 438, 1353, 1473, 1536
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 2 cut(s) 356, 363
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 1210
BpuMI CCSGG 5 cut(s) 221, 222, 364, 412, 413
Bsa29I ATCGAT 1 cut(s) 1119
BsaHI GRCGYC 2 cut(s) 591, 954
BsaJI CCNNGG 5 cut(s) 220, 411, 467, 1000, 1302
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 417, 796, 1016
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 348, 903
Bse3DI GCAATG 1 cut(s) 20
BseBI CCWGG 3 cut(s) 342, 468, 652
BseCI ATCGAT 1 cut(s) 1119
BseDI CCNNGG 5 cut(s) 220, 411, 467, 1000, 1302
BseGI GGATG 7 cut(s) 234, 259, 426, 503, 559, 628, 1074
BseLI CCNNNNNNNGG 4 cut(s) 354, 417, 796, 1016
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 123, 1562
BseNI ACTGG 2 cut(s) 348, 903
BseRI GAGGAG 2 cut(s) 488, 1401
BseSI GKGCMC 1 cut(s) 1129
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 7 cut(s) 552, 569, 652, 853, 1529, 1588, 1591
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 2 cut(s) 1204, 1304
Bsh1236I CGCG 1 cut(s) 849
Bsh1285I CGRYCG 2 cut(s) 389, 516
BshFI GGCC 2 cut(s) 280, 388
BshNI GGYRCC 1 cut(s) 1262
BshVI ATCGAT 1 cut(s) 1119
BsiEI CGRYCG 2 cut(s) 389, 516
BsiHKAI GWGCWC 1 cut(s) 1129
BsiHKCI CYCGRG 4 cut(s) 220, 411, 493, 829
BsiSI CCGG 5 cut(s) 221, 364, 385, 399, 412
BslFI GGGAC 2 cut(s) 504, 1148
BslI CCNNNNNNNGG 4 cut(s) 354, 417, 796, 1016
BsmAI GTCTC 3 cut(s) 451, 572, 1449
BsmBI CGTCTC 2 cut(s) 451, 1449
BsmFI GGGAC 2 cut(s) 504, 1148
BsmI GAATGC 1 cut(s) 1011
BsnI GGCC 2 cut(s) 280, 388
BsoBI CYCGRG 4 cut(s) 220, 411, 493, 829
Bsp1286I GDGCHC 1 cut(s) 1129
BspACI CCGC 9 cut(s) 454, 537, 543, 578, 739, 742, 755, 796, 849
BspANI GGCC 2 cut(s) 280, 388
BspCNI CTCAG 2 cut(s) 124, 1561
BspDI ATCGAT 1 cut(s) 1119
BspFNI CGCG 1 cut(s) 849
BspLI GGNNCC 5 cut(s) 339, 346, 520, 649, 1264
BspMI ACCTGC 1 cut(s) 1530
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 5 cut(s) 52, 642, 655, 690, 1695
BspT107I GGYRCC 1 cut(s) 1262
BsrBI CCGCTC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 2 cut(s) 348, 903
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 5 cut(s) 220, 411, 467, 1000, 1302
BssNI GRCGYC 2 cut(s) 591, 954
BssT1I CCWWGG 2 cut(s) 1000, 1302
Bst2UI CCWGG 3 cut(s) 342, 468, 652
Bst4CI ACNGT 2 cut(s) 265, 733
Bst6I CTCTTC 4 cut(s) 386, 852, 1374, 1413
BstACI GRCGYC 2 cut(s) 591, 954
BstC8I GCNNGC 4 cut(s) 288, 292, 787, 1662
BstDEI CTNAG 5 cut(s) 132, 295, 874, 1331, 1548
BstF5I GGATG 7 cut(s) 234, 259, 426, 503, 559, 628, 1074
BstFNI CGCG 1 cut(s) 849
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 1 cut(s) 395
BstMAI GTCTC 3 cut(s) 451, 572, 1449
BstMCI CGRYCG 2 cut(s) 389, 516
BstMWI GCNNNNNNNGC 4 cut(s) 17, 239, 399, 1039
BstNI CCWGG 3 cut(s) 342, 468, 652
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 8 cut(s) 219, 220, 340, 362, 410, 411, 466, 650
BstSLI GKGCMC 1 cut(s) 1129
BstUI CGCG 1 cut(s) 849
BstV1I GCAGC 7 cut(s) 552, 569, 652, 853, 1529, 1588, 1591
BstV2I GAAGAC 4 cut(s) 438, 1353, 1473, 1536
BstX2I RGATCY 4 cut(s) 331, 505, 647, 682
BstYI RGATCY 4 cut(s) 331, 505, 647, 682
BstZI CGGCCG 1 cut(s) 386
Bsu15I ATCGAT 1 cut(s) 1119
BsuI GTATCC 3 cut(s) 957, 1216, 1709
BsuRI GGCC 2 cut(s) 280, 388
BsuTUI ATCGAT 1 cut(s) 1119
BtgZI GCGATG 2 cut(s) 707, 1127
BtsCI GGATG 7 cut(s) 234, 259, 426, 503, 559, 628, 1074
BveI ACCTGC 1 cut(s) 1530
Cac8I GCNNGC 4 cut(s) 288, 292, 787, 1662
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 278, 518
Cfr9I CCCGGG 2 cut(s) 220, 411
ClaI ATCGAT 1 cut(s) 1119
CseI GACGC 4 cut(s) 468, 580, 855, 872
Csp6I GTAC 3 cut(s) 215, 823, 1510
CviAII CATG 2 cut(s) 287, 1293
CviQI GTAC 3 cut(s) 215, 823, 1510
DdeI CTNAG 5 cut(s) 132, 295, 874, 1331, 1548
DrdI GACNNNNNNGTC 1 cut(s) 1355
DseDI GACNNNNNNGTC 1 cut(s) 1355
EaeI YGGCCR 1 cut(s) 386
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 4 cut(s) 386, 852, 1374, 1413
EarI CTCTTC 4 cut(s) 386, 852, 1374, 1413
EciI GGCGGA 1 cut(s) 469
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 1000, 1302
Eco47I GGWCC 1 cut(s) 518
Eco52I CGGCCG 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 1629, 1641
Eco88I CYCGRG 4 cut(s) 220, 411, 493, 829
EcoRI GAATTC 2 cut(s) 317, 1273
EcoRII CCWGG 3 cut(s) 340, 466, 650
EcoT14I CCWWGG 2 cut(s) 1000, 1302
ErhI CCWWGG 2 cut(s) 1000, 1302
Esp3I CGTCTC 2 cut(s) 451, 1449
FaeI CATG 2 cut(s) 290, 1296
FaqI GGGAC 2 cut(s) 504, 1148
FatI CATG 2 cut(s) 286, 1292
FauI CCCGC 1 cut(s) 789
FauNDI CATATG 2 cut(s) 205, 949
FokI GGATG 7 cut(s) 221, 266, 433, 510, 566, 635, 1081
FspBI CTAG 2 cut(s) 8, 291
GlaI GCGC 1 cut(s) 394
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 356, 363
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 2 cut(s) 280, 388
HapII CCGG 5 cut(s) 221, 364, 385, 399, 412
HgaI GACGC 4 cut(s) 468, 580, 855, 872
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 2 cut(s) 591, 954
Hin1II CATG 2 cut(s) 290, 1296
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HinfI GANTC 9 cut(s) 4, 257, 528, 659, 1020, 1063, 1136, 1156, 1692
HpaII CCGG 5 cut(s) 221, 364, 385, 399, 412
HphI GGTGA 6 cut(s) 181, 239, 1385, 1415, 1454, 1603
Hpy166II GTNNAC 4 cut(s) 217, 313, 1127, 1512
Hpy188I TCNGA 6 cut(s) 57, 750, 845, 1068, 1369, 1551
Hpy8I GTNNAC 4 cut(s) 217, 313, 1127, 1512
Hpy99I CGWCG 1 cut(s) 1287
HpyCH4III ACNGT 2 cut(s) 265, 733
HpyCH4IV ACGT 2 cut(s) 81, 954
HpyCH4V TGCA 8 cut(s) 145, 557, 721, 812, 1094, 1127, 1221, 1321
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 239, 399, 1039
HpyF3I CTNAG 5 cut(s) 132, 295, 874, 1331, 1548
HpySE526I ACGT 2 cut(s) 81, 954
Hsp92I GRCGYC 2 cut(s) 591, 954
Hsp92II CATG 2 cut(s) 290, 1296
HspAI GCGC 1 cut(s) 393
LmnI GCTCC 5 cut(s) 44, 337, 344, 736, 1433
Lsp1109I GCAGC 7 cut(s) 552, 569, 652, 853, 1529, 1588, 1591
LweI GCATC 4 cut(s) 220, 544, 1081, 1187
MaeI CTAG 2 cut(s) 8, 291
MaeII ACGT 2 cut(s) 81, 954
MaeIII GTNAC 2 cut(s) 1021, 1102
MbiI CCGCTC 1 cut(s) 739
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 4 cut(s) 331, 505, 647, 682
MhlI GDGCHC 1 cut(s) 1129
MluCI AATT 9 cut(s) 317, 631, 699, 711, 902, 1257, 1273, 1360, 1675
MlyI GAGTC 2 cut(s) 653, 1029
MmeI TCCRAC 1 cut(s) 636
MseI TTAA 2 cut(s) 84, 1635
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 543
MspI CCGG 5 cut(s) 221, 364, 385, 399, 412
MspR9I CCNGG 8 cut(s) 221, 222, 342, 364, 412, 413, 468, 652
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 1011
MvaI CCWGG 3 cut(s) 342, 468, 652
MvnI CGCG 1 cut(s) 849
MwoI GCNNNNNNNGC 4 cut(s) 17, 239, 399, 1039
NciI CCSGG 5 cut(s) 221, 222, 364, 412, 413
NdeI CATATG 2 cut(s) 205, 949
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 290, 1296
NlaIV GGNNCC 5 cut(s) 339, 346, 520, 649, 1264
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 1021, 1102
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 222
PaeI GCATGC 1 cut(s) 290
PctI GAATGC 1 cut(s) 1011
PfeI GAWTC 7 cut(s) 4, 257, 528, 1063, 1136, 1156, 1692
PflFI GACNNNGTC 1 cut(s) 462
Ple19I CGATCG 1 cut(s) 516
PleI GAGTC 2 cut(s) 653, 1028
PpsI GAGTC 2 cut(s) 653, 1028
PsiI TTATAA 1 cut(s) 888
Psp1406I AACGTT 1 cut(s) 81
Psp6I CCWGG 3 cut(s) 340, 466, 650
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 3 cut(s) 340, 466, 650
PspN4I GGNNCC 5 cut(s) 339, 346, 520, 649, 1264
PspPI GGNCC 2 cut(s) 278, 518
PsuI RGATCY 4 cut(s) 331, 505, 647, 682
PsyI GACNNNGTC 1 cut(s) 462
PvuI CGATCG 1 cut(s) 516
RsaI GTAC 3 cut(s) 216, 824, 1511
RsaNI GTAC 3 cut(s) 215, 823, 1510
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 84, 1635
Sau96I GGNCC 2 cut(s) 278, 518
ScaI AGTACT 1 cut(s) 824
SchI GAGTC 2 cut(s) 653, 1029
ScrFI CCNGG 8 cut(s) 221, 222, 342, 364, 412, 413, 468, 652
SduI GDGCHC 1 cut(s) 1129
SfaNI GCATC 4 cut(s) 220, 544, 1081, 1187
SgrAI CRCCGGYG 1 cut(s) 398
SinI GGWCC 1 cut(s) 518
SmaI CCCGGG 2 cut(s) 222, 413
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 1225
SmoI CTYRAG 1 cut(s) 1225
SphI GCATGC 1 cut(s) 290
Sse9I AATT 9 cut(s) 317, 631, 699, 711, 902, 1257, 1273, 1360, 1675
SsiI CCGC 9 cut(s) 454, 537, 543, 578, 739, 742, 755, 796, 849
SspMI CTAG 2 cut(s) 8, 291
StyD4I CCNGG 8 cut(s) 219, 220, 340, 362, 410, 411, 466, 650
StyI CCWWGG 2 cut(s) 1000, 1302
TaaI ACNGT 2 cut(s) 265, 733
TaiI ACGT 2 cut(s) 84, 957
TaqI TCGA 5 cut(s) 512, 526, 1074, 1119, 1690
TaqII GACCGA 1 cut(s) 506
TasI AATT 9 cut(s) 317, 631, 699, 711, 902, 1257, 1273, 1360, 1675
TatI WGTACW 2 cut(s) 822, 1509
TauI GCSGC 3 cut(s) 540, 742, 758
TfiI GAWTC 7 cut(s) 4, 257, 528, 1063, 1136, 1156, 1692
Tru1I TTAA 2 cut(s) 84, 1635
Tru9I TTAA 2 cut(s) 84, 1635
TseFI GTSAC 2 cut(s) 1021, 1102
TseI GCWGC 7 cut(s) 540, 557, 640, 866, 1517, 1601, 1604
Tsp45I GTSAC 2 cut(s) 1021, 1102
TspDTI ATGAA 5 cut(s) 920, 1281, 1431, 1479, 1658
TspMI CCCGGG 2 cut(s) 220, 411
Tth111I GACNNNGTC 1 cut(s) 462
VneI GTGCAC 1 cut(s) 1125
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 5 cut(s) 317, 711, 902, 1273, 1675
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 1322
XmaI CCCGGG 2 cut(s) 220, 411
XspI CTAG 2 cut(s) 8, 291
ZraI GACGTC 1 cut(s) 955
ZrmI AGTACT 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.