Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003272.1

Orthogroup ID

OG0018962

Physical Location & Seq

Genomic Coordinates Forward (+)

40733 .. 43150

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003272.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggtcaacgagacggtggttgaagctgtgacgccgggcaagagtggtagttgtggtgtgcttgttgagagggaacaaggtgagagctttgaggagtgtgcaacaagagaagtgaaggaagaaactggtttagacattgataagttacagtttttgacagtcacaaacaacctgttcttagacaaagccaaaccataccattatgtgagaaggaaaacccatagtagttcgtttctctcccggccgagcaccactggcgatcctgcagttgcgttccggcccgggaggggatggtgttgttggttagtggtgggtcttcagggcagagatgcggtccaagggaggagggtgtgggtagatctctcgatcggtccctctcaaatcaggggcgacagcggttgtggggatgcagcaacttgtttctggccggcggtgggagttggcgtcatcaacgaagcgatctgggttatggaggatgcgggcaactcgcggcagcagggatcctggttgggctctgtttctgtctggtttctggatctggttgcggtgtcaattgggtgtagaatttgtctgcatattggcatggtggagcgacggtatcgggaggcggcgaggccgtggggtggcgttgatggtgcttgccggtggcgggattgggtttctgcattggtggagtactgctcaaggaagtgggtgttgggtcgggcccctgtttttgggccttggagcacttttggacacggtgttgaagaggacgctgtcttcttggaggttgattgtaaggttctactagaaatttcggggtcaaatgttcaaagtagccttggaaatgggtttagtgtttggaccctttggcctgatggtctctatgaccgtggtttcttggggtttaggtttatgtccccccctttgtacgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006195 GO:0006203 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008413 GO:0009056 GO:0009058 GO:0009117 GO:0009141 GO:0009143 GO:0009144 GO:0009146 GO:0009151 GO:0009155 GO:0009166 GO:0009200 GO:0009204 GO:0009215 GO:0009217 GO:0009262 GO:0009264 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019177 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035539 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046070 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

306

Amino Acids

33.81

Weight (kDa)

5.69

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149511 RchiOBHm_Chr3g0471491 RchiOBHm_Chr4g0427061 RchiOBHm_Chr4g0440021 RchiOBHm_Chr7g0242141
rosa_multiflora	Rmu_sc0003272.1_g000010 Rmu_sc0004898.1_g000008 Rmu_ssc0000309.1_g000009
rosa_roxburghii	Rroxscaffold_3G00236630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	490, 917
AciI	CCGC	8 cut(s)	332, 396, 431, 479, 490, 545, 608, 649
AclWI	GGATC	4 cut(s)	254, 495, 508, 543
AcoI	YGGCCR	2 cut(s)	242, 425
AcsI	RAATTY	2 cut(s)	564, 795
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	32, 444
AfaI	GTAC	2 cut(s)	677, 914
AfiI	CCNNNNNNNGG	5 cut(s)	287, 434, 623, 649, 716
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	3 cut(s)	23, 749, 815
AjnI	CCWGG	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	2 cut(s)	26, 87
AluI	AGCT	2 cut(s)	26, 87
Alw21I	GWGCWC	2 cut(s)	251, 731
Alw26I	GTCTC	2 cut(s)	5, 869
AlwI	GGATC	4 cut(s)	254, 495, 508, 543
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	7 cut(s)	242, 278, 425, 614, 705, 719, 854
ApaI	GGGCCC	1 cut(s)	709
ApeKI	GCWGC	2 cut(s)	410, 493
ApoI	RAATTY	2 cut(s)	564, 795
AspS9I	GGNCC	7 cut(s)	279, 334, 371, 705, 706, 719, 846
AsuC2I	CCSGG	4 cut(s)	36, 241, 282, 283
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	3 cut(s)	334, 371, 846
BaeGI	GKGCMC	1 cut(s)	709
BamHI	GGATCC	1 cut(s)	500
BanII	GRGCYC	2 cut(s)	515, 709
BbsI	GAAGAC	2 cut(s)	308, 754
Bbv12I	GWGCWC	2 cut(s)	251, 731
BbvI	GCAGC	2 cut(s)	422, 505
BccI	CCATC	3 cut(s)	285, 626, 854
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	505
BcnI	CCSGG	4 cut(s)	36, 241, 282, 283
BcoDI	GTCTC	2 cut(s)	5, 869
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	4 cut(s)	411, 491, 494, 609
BlsI	GCNGC	4 cut(s)	412, 492, 495, 610
BmcAI	AGTACT	1 cut(s)	677
Bme1390I	CCNGG	5 cut(s)	36, 241, 282, 283, 505
Bme18I	GGWCC	3 cut(s)	334, 371, 846
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	7 cut(s)	279, 334, 371, 705, 706, 719, 846
BmiI	GGNNCC	5 cut(s)	373, 502, 707, 708, 848
BmrFI	CCNGG	5 cut(s)	36, 241, 282, 283, 505
BmsI	GCATC	3 cut(s)	319, 397, 466
BpiI	GAAGAC	2 cut(s)	308, 754
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpuEI	CTTGAG	1 cut(s)	667
BpuMI	CCSGG	4 cut(s)	36, 241, 282, 283
BsaHI	GRCGYC	2 cut(s)	32, 444
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	6 cut(s)	281, 337, 617, 722, 823, 874
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 581, 611
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 434, 623, 649, 716
Bse118I	RCCGGY	2 cut(s)	427, 642
Bse1I	ACTGG	2 cut(s)	130, 259
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	6 cut(s)	281, 337, 617, 722, 823, 874
BseGI	GGATG	3 cut(s)	296, 412, 481
BseLI	CCNNNNNNNGG	5 cut(s)	287, 434, 623, 649, 716
BseNI	ACTGG	2 cut(s)	130, 259
BseRI	GAGGAG	2 cut(s)	107, 358
BseSI	GKGCMC	1 cut(s)	709
BseX3I	CGGCCG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	422, 505
Bsh1236I	CGCG	2 cut(s)	490, 917
Bsh1285I	CGRYCG	2 cut(s)	245, 369
BshFI	GGCC	7 cut(s)	244, 280, 427, 616, 707, 721, 856
BsiEI	CGRYCG	2 cut(s)	245, 369
BsiHKAI	GWGCWC	2 cut(s)	251, 731
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	6 cut(s)	35, 241, 277, 282, 428, 643
BslFI	GGGAC	2 cut(s)	357, 886
BslI	CCNNNNNNNGG	5 cut(s)	287, 434, 623, 649, 716
BsmAI	GTCTC	2 cut(s)	5, 869
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	357, 886
BsnI	GGCC	7 cut(s)	244, 280, 427, 616, 707, 721, 856
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	1 cut(s)	281
Bsp120I	GGGCCC	1 cut(s)	705
Bsp1286I	GDGCHC	4 cut(s)	251, 515, 709, 731
Bsp143I	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
BspACI	CCGC	8 cut(s)	332, 396, 431, 479, 490, 545, 608, 649
BspANI	GGCC	7 cut(s)	244, 280, 427, 616, 707, 721, 856
BspFNI	CGCG	2 cut(s)	490, 917
BspLI	GGNNCC	5 cut(s)	373, 502, 707, 708, 848
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	4 cut(s)	254, 495, 508, 543
BspTNI	GGTCTC	1 cut(s)	869
BsrFI	RCCGGY	2 cut(s)	427, 642
BsrI	ACTGG	2 cut(s)	130, 259
BssAI	RCCGGY	2 cut(s)	427, 642
BssECI	CCNNGG	6 cut(s)	281, 337, 617, 722, 823, 874
BssMI	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
BssNI	GRCGYC	2 cut(s)	32, 444
BssT1I	CCWWGG	3 cut(s)	337, 722, 823
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	6 cut(s)	16, 150, 160, 597, 743, 875
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	2 cut(s)	32, 444
BstC8I	GCNNGC	3 cut(s)	429, 481, 640
BstDEI	CTNAG	1 cut(s)	178
BstDSI	CCRYGG	2 cut(s)	617, 874
BstF5I	GGATG	3 cut(s)	296, 412, 481
BstFNI	CGCG	2 cut(s)	490, 917
BstKTI	GATC	6 cut(s)	262, 361, 369, 462, 503, 538
BstMAI	GTCTC	2 cut(s)	5, 869
BstMBI	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
BstMCI	CGRYCG	2 cut(s)	245, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	5 cut(s)	34, 239, 280, 281, 503
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	490, 917
BstV1I	GCAGC	2 cut(s)	422, 505
BstV2I	GAAGAC	2 cut(s)	308, 754
BstX2I	RGATCY	3 cut(s)	358, 500, 535
BstYI	RGATCY	3 cut(s)	358, 500, 535
BstZI	CGGCCG	1 cut(s)	242
BsuRI	GGCC	7 cut(s)	244, 280, 427, 616, 707, 721, 856
BtgI	CCRYGG	2 cut(s)	617, 874
BtsCI	GGATG	3 cut(s)	296, 412, 481
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	429, 481, 640
Cfr10I	RCCGGY	2 cut(s)	427, 642
Cfr13I	GGNCC	7 cut(s)	279, 334, 371, 705, 706, 719, 846
Cfr9I	CCCGGG	1 cut(s)	281
CseI	GACGC	3 cut(s)	40, 433, 764
Csp6I	GTAC	2 cut(s)	676, 913
CviAII	CATG	1 cut(s)	583
CviQI	GTAC	2 cut(s)	676, 913
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	6 cut(s)	261, 360, 368, 461, 502, 537
DpnII	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
EaeI	YGGCCR	2 cut(s)	242, 425
EagI	CGGCCG	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
EclXI	CGGCCG	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	337, 722, 823
Eco24I	GRGCYC	2 cut(s)	515, 709
Eco31I	GGTCTC	1 cut(s)	869
Eco47I	GGWCC	3 cut(s)	334, 371, 846
Eco52I	CGGCCG	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	3 cut(s)	337, 722, 823
EcoT38I	GRGCYC	2 cut(s)	515, 709
ErhI	CCWWGG	3 cut(s)	337, 722, 823
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	586
FaiI	YATR	8 cut(s)	196, 204, 222, 470, 576, 584, 870, 899
FaqI	GGGAC	2 cut(s)	357, 886
FatI	CATG	1 cut(s)	582
FauI	CCCGC	2 cut(s)	472, 642
Fnu4HI	GCNGC	4 cut(s)	411, 491, 494, 609
FokI	GGATG	3 cut(s)	303, 419, 488
FriOI	GRGCYC	2 cut(s)	515, 709
Fsp4HI	GCNGC	4 cut(s)	411, 491, 494, 609
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	4 cut(s)	411, 491, 494, 609
HaeIII	GGCC	7 cut(s)	244, 280, 427, 616, 707, 721, 856
HapII	CCGG	6 cut(s)	35, 241, 277, 282, 428, 643
HgaI	GACGC	3 cut(s)	40, 433, 764
Hin1I	GRCGYC	2 cut(s)	32, 444
Hin1II	CATG	1 cut(s)	586
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaII	CCGG	6 cut(s)	35, 241, 277, 282, 428, 643
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	3 cut(s)	364, 533, 602
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	597
HpyAV	CCTTC	2 cut(s)	109, 204
HpyCH4III	ACNGT	6 cut(s)	16, 150, 160, 597, 743, 875
HpyCH4V	TGCA	5 cut(s)	101, 266, 410, 574, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	178
Hsp92I	GRCGYC	2 cut(s)	32, 444
Hsp92II	CATG	1 cut(s)	586
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Kzo9I	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
LmnI	GCTCC	2 cut(s)	589, 726
Lsp1109I	GCAGC	2 cut(s)	422, 505
LweI	GCATC	3 cut(s)	319, 397, 466
MaeI	CTAG	1 cut(s)	791
MaeIII	GTNAC	3 cut(s)	28, 144, 160
MalI	GATC	6 cut(s)	261, 360, 368, 461, 502, 537
MboI	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
MboII	GAAGA	4 cut(s)	131, 308, 754, 761
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	3 cut(s)	358, 500, 535
MhlI	GDGCHC	4 cut(s)	251, 515, 709, 731
MluCI	AATT	3 cut(s)	552, 564, 795
MluI	ACGCGT	1 cut(s)	915
MroNI	GCCGGC	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	6 cut(s)	35, 241, 277, 282, 428, 643
MspR9I	CCNGG	5 cut(s)	36, 241, 282, 283, 505
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	2 cut(s)	490, 917
MwoI	GCNNNNNNNGC	1 cut(s)	255
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	4 cut(s)	36, 241, 282, 283
NdeII	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	5 cut(s)	373, 502, 707, 708, 848
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	28, 160
PdiI	GCCGGC	1 cut(s)	429
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	4 cut(s)	412, 492, 495, 610
Ple19I	CGATCG	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	5 cut(s)	373, 502, 707, 708, 848
PspOMI	GGGCCC	1 cut(s)	705
PspPI	GGNCC	7 cut(s)	279, 334, 371, 705, 706, 719, 846
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	358, 500, 535
PsyI	GACNNNGTC	1 cut(s)	758
PvuI	CGATCG	1 cut(s)	369
RsaI	GTAC	2 cut(s)	677, 914
RsaNI	GTAC	2 cut(s)	676, 913
SatI	GCNGC	4 cut(s)	411, 491, 494, 609
Sau3AI	GATC	6 cut(s)	259, 358, 366, 459, 500, 535
Sau96I	GGNCC	7 cut(s)	279, 334, 371, 705, 706, 719, 846
ScaI	AGTACT	1 cut(s)	677
ScrFI	CCNGG	5 cut(s)	36, 241, 282, 283, 505
SduI	GDGCHC	4 cut(s)	251, 515, 709, 731
SetI	ASST	7 cut(s)	28, 82, 89, 174, 774, 786, 896
SfaNI	GCATC	3 cut(s)	319, 397, 466
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	3 cut(s)	334, 371, 846
SmaI	CCCGGG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	3 cut(s)	552, 564, 795
SsiI	CCGC	8 cut(s)	332, 396, 431, 479, 490, 545, 608, 649
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	5 cut(s)	34, 239, 280, 281, 503
StyI	CCWWGG	3 cut(s)	337, 722, 823
TaaI	ACNGT	6 cut(s)	16, 150, 160, 597, 743, 875
TaqI	TCGA	1 cut(s)	365
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	552, 564, 795
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	2 cut(s)	493, 611
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	28, 160
TseI	GCWGC	2 cut(s)	410, 493
Tsp45I	GTSAC	2 cut(s)	28, 160
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	758
VpaK11BI	GGWCC	3 cut(s)	334, 371, 846
XapI	RAATTY	2 cut(s)	564, 795
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	791
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.