Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0018962

Physical Location & Seq

Genomic Coordinates Forward (+)

13029 .. 17939

Gene Structure 4911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggcggcctctcaagcaagccttctcctccagaaacagctcaaagatctttgcaagaaccctgtggatgggttctcggcggggctggtcgatgagaacaatatctttgagtggagcgtcacaattattggacctcccgatacgctatatgagggaggatttttcaacgccatcatgagttttccttctaattacccgaacagccctccaacagtgaagtttacttcagagttgtggcatccaaatgtttatcctgatgggcgtgtttgcatttccattcttcatccgcctggtgatgatccaaatggttatgagcttgcaagtgagcgttggacacctgtgcatacggttgaaagcatagttttgagtataatatcaatgctatccagtccaaatgacgaatctcctgcaaatgttgaagctgctaaggaatggagagatcggagagatgatttcaagaagaaggtcggccgctgcagggaaagcgccccacgcgcgcagaagaaaaggaaaatccggagttgttcgtttctctcccggccgagcgctaccggcgattgccgttgcgttctggctcgggaggggatgtcgttgctggttagtggcgggctttcagggcagagtcgtggtccaggggaggagggtgggttcttgacttcgggttgggcagatctctggatctatccctcttggatcagggacgatggaggttgtggggatgcagcaaattgcttctggccagcggtgggagatggcatcatcgaaggagcaatctgggttatggtggatgcgggcaactcgtggcagaagggatccccgtttggatatgtttctgtagtgattctggatttgattgtgttggcaattgggtatgcatattggcaaggtggagcagcggtaccaagaagcggcgaggccatggggtggtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

310

Amino Acids

33.7

Weight (kDa)

5.12

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149511 RchiOBHm_Chr3g0471491 RchiOBHm_Chr4g0427061 RchiOBHm_Chr4g0440021 RchiOBHm_Chr7g0242141
rosa_multiflora	Rmu_sc0003272.1_g000010 Rmu_sc0004898.1_g000008 Rmu_ssc0000309.1_g000009
rosa_roxburghii	Rroxscaffold_3G00236630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	898
AccB1I	GGYRCC	1 cut(s)	898
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccII	CGCG	2 cut(s)	495, 497
AccIII	TCCGGA	1 cut(s)	516
AciI	CCGC	9 cut(s)	5, 80, 287, 472, 606, 743, 791, 896, 909
AclWI	GGATC	5 cut(s)	293, 686, 701, 807, 820
AcoI	YGGCCR	3 cut(s)	469, 539, 737
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	900
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	5 cut(s)	68, 478, 746, 908, 924
AgsI	TTSAA	4 cut(s)	166, 353, 419, 457
AjnI	CCWGG	2 cut(s)	289, 631
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	3 cut(s)	40, 316, 422
AluI	AGCT	3 cut(s)	40, 316, 422
AlwI	GGATC	5 cut(s)	293, 686, 701, 807, 820
Ama87I	CYCGRG	1 cut(s)	576
Aor13HI	TCCGGA	1 cut(s)	516
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	5 cut(s)	6, 469, 539, 737, 915
ApeKI	GCWGC	4 cut(s)	422, 474, 722, 893
Asp718I	GGTACC	1 cut(s)	898
AspLEI	GCGC	4 cut(s)	488, 497, 499, 548
AspS9I	GGNCC	2 cut(s)	131, 629
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	2 cut(s)	131, 629
BalI	TGGCCA	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	898
BauI	CACGAG	1 cut(s)	799
BbvI	GCAGC	4 cut(s)	409, 461, 734, 905
BccI	CCATC	5 cut(s)	62, 179, 251, 698, 746
BceAI	ACGGC	1 cut(s)	546
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	291, 633
BcnI	CCSGG	1 cut(s)	538
BfmI	CTRYAG	2 cut(s)	475, 834
BfoI	RGCGCY	2 cut(s)	489, 549
BglII	AGATCT	2 cut(s)	46, 670
BisI	GCNGC	7 cut(s)	6, 423, 472, 475, 723, 894, 910
BlsI	GCNGC	7 cut(s)	7, 424, 473, 476, 724, 895, 911
Bme1390I	CCNGG	3 cut(s)	291, 538, 633
Bme18I	GGWCC	2 cut(s)	131, 629
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	131, 629
BmiI	GGNNCC	2 cut(s)	814, 900
BmrFI	CCNGG	3 cut(s)	291, 538, 633
BmsI	GCATC	4 cut(s)	247, 709, 765, 778
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	632, 918
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	6 cut(s)	572, 602, 632, 662, 882, 912
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 478, 746, 908, 924
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	291, 633
BseDI	CCNNGG	2 cut(s)	632, 918
BseGI	GGATG	6 cut(s)	73, 238, 283, 591, 724, 793
BseLI	CCNNNNNNNGG	5 cut(s)	68, 478, 746, 908, 924
BseNI	ACTGG	1 cut(s)	387
BsePI	GCGCGC	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	17, 653
BseX3I	CGGCCG	2 cut(s)	469, 539
BseXI	GCAGC	4 cut(s)	409, 461, 734, 905
Bsh1236I	CGCG	2 cut(s)	495, 497
Bsh1285I	CGRYCG	2 cut(s)	472, 542
BshFI	GGCC	5 cut(s)	8, 471, 541, 739, 917
BshNI	GGYRCC	1 cut(s)	898
BsiEI	CGRYCG	2 cut(s)	472, 542
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	517, 538, 552
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	5 cut(s)	68, 478, 746, 908, 924
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	5 cut(s)	8, 471, 541, 739, 917
BsoBI	CYCGRG	1 cut(s)	576
Bsp13I	TCCGGA	1 cut(s)	516
Bsp143I	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	9 cut(s)	5, 80, 287, 472, 606, 743, 791, 896, 909
BspANI	GGCC	5 cut(s)	8, 471, 541, 739, 917
BspEI	TCCGGA	1 cut(s)	516
BspFNI	CGCG	2 cut(s)	495, 497
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	814, 900
BspMAI	CTGCAG	1 cut(s)	479
BspPI	GGATC	5 cut(s)	293, 686, 701, 807, 820
BspT107I	GGYRCC	1 cut(s)	898
BsrFI	RCCGGY	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	632, 918
BssHII	GCGCGC	1 cut(s)	495
BssMI	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
BssSI	CACGAG	1 cut(s)	799
BssT1I	CCWWGG	1 cut(s)	918
Bst2BI	CACGAG	1 cut(s)	799
Bst2UI	CCWGG	2 cut(s)	291, 633
Bst4CI	ACNGT	2 cut(s)	214, 349
BstC8I	GCNNGC	6 cut(s)	19, 318, 497, 608, 741, 793
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	918
BstF5I	GGATG	6 cut(s)	73, 238, 283, 591, 724, 793
BstFNI	CGCG	2 cut(s)	495, 497
BstH2I	RGCGCY	2 cut(s)	489, 549
BstHHI	GCGC	4 cut(s)	488, 497, 499, 548
BstKTI	GATC	7 cut(s)	49, 301, 442, 673, 681, 696, 815
BstMBI	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
BstMCI	CGRYCG	2 cut(s)	472, 542
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 483, 492, 494, 552, 616
BstNI	CCWGG	2 cut(s)	291, 633
BstSCI	CCNGG	3 cut(s)	289, 536, 631
BstSFI	CTRYAG	2 cut(s)	475, 834
BstUI	CGCG	2 cut(s)	495, 497
BstV1I	GCAGC	4 cut(s)	409, 461, 734, 905
BstX2I	RGATCY	4 cut(s)	46, 670, 678, 812
BstYI	RGATCY	4 cut(s)	46, 670, 678, 812
BstZI	CGGCCG	2 cut(s)	469, 539
BsuRI	GGCC	5 cut(s)	8, 471, 541, 739, 917
BtgI	CCRYGG	1 cut(s)	918
BtsCI	GGATG	6 cut(s)	73, 238, 283, 591, 724, 793
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	6 cut(s)	19, 318, 497, 608, 741, 793
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	4 cut(s)	488, 497, 499, 548
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	131, 629
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	2 cut(s)	175, 919
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	7 cut(s)	48, 300, 441, 672, 680, 695, 814
DpnII	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
EaeI	YGGCCR	3 cut(s)	469, 539, 737
EagI	CGGCCG	2 cut(s)	469, 539
EciI	GGCGGA	1 cut(s)	276
EclXI	CGGCCG	2 cut(s)	469, 539
Eco130I	CCWWGG	1 cut(s)	918
Eco47I	GGWCC	2 cut(s)	131, 629
Eco47III	AGCGCT	1 cut(s)	547
Eco52I	CGGCCG	2 cut(s)	469, 539
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	576
EcoRII	CCWGG	2 cut(s)	289, 631
EcoT14I	CCWWGG	1 cut(s)	918
EcoT22I	ATGCAT	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	2 cut(s)	178, 922
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	2 cut(s)	174, 918
FauI	CCCGC	3 cut(s)	73, 599, 784
Fnu4HI	GCNGC	7 cut(s)	6, 423, 472, 475, 723, 894, 910
FokI	GGATG	6 cut(s)	80, 225, 270, 598, 731, 800
Fsp4HI	GCNGC	7 cut(s)	6, 423, 472, 475, 723, 894, 910
GlaI	GCGC	4 cut(s)	487, 496, 498, 547
GluI	GCNGC	7 cut(s)	6, 423, 472, 475, 723, 894, 910
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	2 cut(s)	489, 549
HaeIII	GGCC	5 cut(s)	8, 471, 541, 739, 917
HapII	CCGG	3 cut(s)	517, 538, 552
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	4 cut(s)	488, 497, 499, 548
Hin1II	CATG	2 cut(s)	178, 922
Hin6I	GCGC	4 cut(s)	486, 495, 497, 546
HinP1I	GCGC	4 cut(s)	486, 495, 497, 546
HinfI	GANTC	3 cut(s)	401, 622, 841
HpaII	CCGG	3 cut(s)	517, 538, 552
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	229, 444
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	32, 195, 457, 758, 802
HpyCH4III	ACNGT	2 cut(s)	214, 349
HpyCH4V	TGCA	8 cut(s)	54, 270, 320, 343, 410, 477, 722, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 483, 492, 494, 552, 616
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	178, 922
HspAI	GCGC	4 cut(s)	486, 495, 497, 546
Kpn2I	TCCGGA	1 cut(s)	516
KpnI	GGTACC	1 cut(s)	902
Kzo9I	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
LmnI	GCTCC	3 cut(s)	114, 767, 890
Lsp1109I	GCAGC	4 cut(s)	409, 461, 734, 905
LweI	GCATC	4 cut(s)	247, 709, 765, 778
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	7 cut(s)	48, 300, 441, 672, 680, 695, 814
MboI	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
MboII	GAAGA	3 cut(s)	272, 472, 514
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	4 cut(s)	46, 670, 678, 812
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	4 cut(s)	123, 190, 727, 864
MluNI	TGGCCA	1 cut(s)	739
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	2 cut(s)	233, 311
Mox20I	TGGCCA	1 cut(s)	739
Mph1103I	ATGCAT	1 cut(s)	877
MroI	TCCGGA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	739
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	739
MspA1I	CMGCKG	3 cut(s)	474, 743, 896
MspI	CCGG	3 cut(s)	517, 538, 552
MspR9I	CCNGG	3 cut(s)	291, 538, 633
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	2 cut(s)	291, 633
MvnI	CGCG	2 cut(s)	495, 497
MwoI	GCNNNNNNNGC	6 cut(s)	14, 483, 492, 494, 552, 616
NciI	CCSGG	1 cut(s)	538
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
NlaIII	CATG	2 cut(s)	178, 922
NlaIV	GGNNCC	2 cut(s)	814, 900
NmeAIII	GCCGAG	2 cut(s)	56, 567
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	877
PagI	TCATGA	1 cut(s)	174
PauI	GCGCGC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	401, 841
PflMI	CCANNNNNTGG	1 cut(s)	924
PkrI	GCNGC	7 cut(s)	7, 424, 473, 476, 724, 895, 911
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	289, 631
PspGI	CCWGG	2 cut(s)	289, 631
PspN4I	GGNNCC	2 cut(s)	814, 900
PspPI	GGNCC	2 cut(s)	131, 629
PstI	CTGCAG	1 cut(s)	479
PsuI	RGATCY	4 cut(s)	46, 670, 678, 812
PteI	GCGCGC	1 cut(s)	495
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	7 cut(s)	6, 423, 472, 475, 723, 894, 910
Sau3AI	GATC	7 cut(s)	46, 298, 439, 670, 678, 693, 812
Sau96I	GGNCC	2 cut(s)	131, 629
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	3 cut(s)	291, 538, 633
SetI	ASST	8 cut(s)	42, 136, 318, 340, 424, 468, 712, 889
SfaNI	GCATC	4 cut(s)	247, 709, 765, 778
SfcI	CTRYAG	2 cut(s)	475, 834
SinI	GGWCC	2 cut(s)	131, 629
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	4 cut(s)	123, 190, 727, 864
SsiI	CCGC	9 cut(s)	5, 80, 287, 472, 606, 743, 791, 896, 909
StyD4I	CCNGG	3 cut(s)	289, 536, 631
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	2 cut(s)	214, 349
TaqI	TCGA	2 cut(s)	90, 762
TasI	AATT	4 cut(s)	123, 190, 727, 864
TauI	GCSGC	3 cut(s)	8, 474, 912
TfiI	GAWTC	2 cut(s)	401, 841
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	4 cut(s)	422, 474, 722, 893
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	924
VpaK11BI	GGWCC	2 cut(s)	131, 629
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.