RchiOBHm_Chr7g0242141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018962
Physical Location & Seq
Reverse (-)
68318234 .. 68319175
942 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21701

Sequence Viewer

Length: 783 bp
ATGCCGGTGATGATTGGTGGAAGGCCCTTAGTGCAGAGATGCGGTCCAGAGGAGGAGGAGGAGGAGGAGGGTGGGCTCTTGAGTTCGGGTTGGGCGGATCGGTCTCGATCTGGCCTTCTGGGTTCAGGGGCGACGACGGCCGAGTTATTGCGGCGGTTTGGTTCTTTCCGGCGGAGGGACTCGGAGTCATCGCCTAGGCGGGCTGCATCATGGTGGCGGCGGTCAAATCGCGGCAGAAGGGTTCCCTGTAGGGAGCTGTTTCTATCGTGCGTTTGGATCTGGGTGGGATTGTCAACAGGATGTAGATTCTGTTTGCAACTTGGCATGGTGGAGTGGCGATGGCAGGCAACGGCGAGGCAGTGGGGTGATGACGATGGTGGTTGCCGGCGGGGGGAATGGTTGTCTGCGGTGATTGGGTGTTGTTGGGGAAAGAGGGCTCTGGGCCGGGCCCCTGTCTTTGGGCTTTGTTGTGTTAAGCCATGTAAATGGTGTCATTCCCGAGGACGAGGACGATTTTGTTCAACTCTGGTTTACTTTTGTTGTCGATTTGCTGATAAGCGATCCTTTACACGTGGTCTAGCACCTTCGGACACGATGTTGAAGAGGACGCTGTCTTCTTCGCAGTTGATTACAAGGTTTTACTGGAATTTTCGGGTTTATCTGTTCAACGTAGCCTTGGAAATAGGCGTTTGGTGGTTAGAGTTTGGTGGCCTAATGGTCTCTGTAACCGCGGTTTCTTGGGGTTTTGGTTCATGTCCCCCCAATGTAAGCTTTGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.5

Weight (kDa)

9.58

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 231, 731
AclWI GGATC 3 cut(s) 105, 284, 555
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 646
AcvI CACGTG 1 cut(s) 572
AfiI CCNNNNNNNGG 3 cut(s) 175, 391, 458
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 522, 601, 667
AhdI GACNNNNNGTC 1 cut(s) 184
AluBI AGCT 2 cut(s) 256, 771
AluI AGCT 2 cut(s) 256, 771
Alw26I GTCTC 2 cut(s) 108, 724
AlwI GGATC 3 cut(s) 105, 284, 555
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 6 cut(s) 23, 112, 138, 442, 447, 709
ApaI GGGCCC 1 cut(s) 451
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 646
AspA2I CCTAGG 1 cut(s) 194
AspS9I GGNCC 5 cut(s) 24, 44, 442, 447, 448
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 3 cut(s) 19, 377, 421
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 451
BanII GRGCYC 3 cut(s) 78, 439, 451
BbrPI CACGTG 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 333, 368
BceAI ACGGC 2 cut(s) 153, 366
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 108, 724
BfaI CTAG 2 cut(s) 195, 578
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 4 cut(s) 152, 204, 218, 232
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 4 cut(s) 153, 205, 219, 233
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 5 cut(s) 24, 44, 442, 447, 448
BmiI GGNNCC 3 cut(s) 243, 449, 450
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 29, 215
BpiI GAAGAC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 572
BsaI GGTCTC 2 cut(s) 108, 724
BsaJI CCNNGG 4 cut(s) 194, 499, 675, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 391, 458
Bse118I RCCGGY 2 cut(s) 4, 384
Bse1I ACTGG 1 cut(s) 647
BseDI CCNNGG 4 cut(s) 194, 499, 675, 729
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 3 cut(s) 175, 391, 458
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 6 cut(s) 65, 68, 71, 74, 77, 80
BseSI GKGCMC 1 cut(s) 451
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 231, 731
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 6 cut(s) 25, 114, 140, 444, 449, 711
BsiEI CGRYCG 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 4 cut(s) 5, 169, 385, 445
BslFI GGGAC 2 cut(s) 191, 741
BslI CCNNNNNNNGG 3 cut(s) 175, 391, 458
BsmAI GTCTC 2 cut(s) 108, 724
BsmFI GGGAC 2 cut(s) 191, 741
BsnI GGCC 6 cut(s) 25, 114, 140, 444, 449, 711
Bso31I GGTCTC 2 cut(s) 108, 724
BsoBI CYCGRG 1 cut(s) 498
Bsp120I GGGCCC 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 78, 439, 451
Bsp143I GATC 4 cut(s) 97, 107, 276, 560
BspANI GGCC 6 cut(s) 25, 114, 140, 444, 449, 711
BspFNI CGCG 2 cut(s) 231, 731
BspLI GGNNCC 3 cut(s) 243, 449, 450
BspPI GGATC 3 cut(s) 105, 284, 555
BspTNI GGTCTC 2 cut(s) 108, 724
BsrFI RCCGGY 2 cut(s) 4, 384
BsrI ACTGG 1 cut(s) 647
BssAI RCCGGY 2 cut(s) 4, 384
BssECI CCNNGG 4 cut(s) 194, 499, 675, 729
BssMI GATC 4 cut(s) 97, 107, 276, 560
BssT1I CCWWGG 2 cut(s) 194, 675
Bst6I CTCTTC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 201, 345, 386
BstDEI CTNAG 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 729
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 2 cut(s) 231, 731
BstKTI GATC 4 cut(s) 100, 110, 279, 563
BstMAI GTCTC 2 cut(s) 108, 724
BstMBI GATC 4 cut(s) 97, 107, 276, 560
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 31, 137
BstSCI CCNGG 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 2 cut(s) 231, 731
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 486
BstYI RGATCY 1 cut(s) 276
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 6 cut(s) 25, 114, 140, 444, 449, 711
BtgI CCRYGG 1 cut(s) 729
BtgZI GCGATG 2 cut(s) 174, 352
BtsCI GGATG 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 201, 345, 386
Cfr10I RCCGGY 2 cut(s) 4, 384
Cfr13I GGNCC 5 cut(s) 24, 44, 442, 447, 448
Cfr42I CCGCGG 1 cut(s) 732
CseI GACGC 1 cut(s) 616
CviAII CATG 4 cut(s) 210, 325, 480, 753
DdeI CTNAG 1 cut(s) 28
DpnI GATC 4 cut(s) 99, 109, 278, 562
DpnII GATC 4 cut(s) 97, 107, 276, 560
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 596
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 596
EciI GGCGGA 2 cut(s) 110, 187
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 194, 675
Eco24I GRGCYC 3 cut(s) 78, 439, 451
Eco31I GGTCTC 2 cut(s) 108, 724
Eco47I GGWCC 1 cut(s) 44
Eco52I CGGCCG 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 498
EcoO109I RGGNCCY 2 cut(s) 24, 448
EcoT14I CCWWGG 2 cut(s) 194, 675
EcoT38I GRGCYC 3 cut(s) 78, 439, 451
ErhI CCWWGG 2 cut(s) 194, 675
FaeI CATG 4 cut(s) 213, 328, 483, 756
FaiI YATR 4 cut(s) 211, 326, 481, 754
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 2 cut(s) 191, 741
FatI CATG 4 cut(s) 209, 324, 479, 752
FauI CCCGC 2 cut(s) 192, 381
Fnu4HI GCNGC 4 cut(s) 152, 204, 218, 232
FokI GGATG 1 cut(s) 312
FriOI GRGCYC 3 cut(s) 78, 439, 451
Fsp4HI GCNGC 4 cut(s) 152, 204, 218, 232
FspBI CTAG 2 cut(s) 195, 578
GluI GCNGC 4 cut(s) 152, 204, 218, 232
HaeIII GGCC 6 cut(s) 25, 114, 140, 444, 449, 711
HapII CCGG 4 cut(s) 5, 169, 385, 445
HgaI GACGC 1 cut(s) 616
Hin1II CATG 4 cut(s) 213, 328, 483, 756
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 3 cut(s) 179, 185, 306
HpaII CCGG 4 cut(s) 5, 169, 385, 445
HphI GGTGA 3 cut(s) 19, 377, 421
Hpy166II GTNNAC 2 cut(s) 294, 532
Hpy188I TCNGA 2 cut(s) 184, 589
Hpy188III TCNNGA 4 cut(s) 47, 79, 105, 498
Hpy8I GTNNAC 2 cut(s) 294, 532
Hpy99I CGWCG 2 cut(s) 136, 139
HpyAV CCTTC 4 cut(s) 15, 125, 231, 594
HpyCH4IV ACGT 2 cut(s) 571, 669
HpyCH4V TGCA 3 cut(s) 34, 206, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 137
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 2 cut(s) 571, 669
Hsp92II CATG 4 cut(s) 213, 328, 483, 756
KroI GCCGGC 1 cut(s) 384
KroNI GCCGGC 1 cut(s) 386
KspI CCGCGG 1 cut(s) 732
Kzo9I GATC 4 cut(s) 97, 107, 276, 560
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 29, 215
MaeI CTAG 2 cut(s) 195, 578
MaeII ACGT 2 cut(s) 571, 669
MaeIII GTNAC 1 cut(s) 724
MalI GATC 4 cut(s) 99, 109, 278, 562
MboI GATC 4 cut(s) 97, 107, 276, 560
MboII GAAGA 3 cut(s) 606, 609, 613
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 3 cut(s) 78, 439, 451
MluCI AATT 1 cut(s) 646
MlyI GAGTC 2 cut(s) 173, 194
MroNI GCCGGC 1 cut(s) 384
MseI TTAA 2 cut(s) 474, 781
MslI CAYNNNNRTG 2 cut(s) 211, 484
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 4 cut(s) 5, 169, 385, 445
MspR9I CCNGG 1 cut(s) 446
MvnI CGCG 2 cut(s) 231, 731
MwoI GCNNNNNNNGC 2 cut(s) 31, 137
NaeI GCCGGC 1 cut(s) 386
NciI CCSGG 1 cut(s) 446
NdeII GATC 4 cut(s) 97, 107, 276, 560
NgoMIV GCCGGC 1 cut(s) 384
NlaIII CATG 4 cut(s) 213, 328, 483, 756
NlaIV GGNNCC 3 cut(s) 243, 449, 450
NmeAIII GCCGAG 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 610
PkrI GCNGC 4 cut(s) 153, 205, 219, 233
PleI GAGTC 2 cut(s) 173, 193
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 2 cut(s) 173, 193
Ppu21I YACGTR 1 cut(s) 572
PspCI CACGTG 1 cut(s) 572
PspN4I GGNNCC 3 cut(s) 243, 449, 450
PspOMI GGGCCC 1 cut(s) 447
PspPI GGNCC 5 cut(s) 24, 44, 442, 447, 448
PsuI RGATCY 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 610
RseI CAYNNNNRTG 2 cut(s) 211, 484
SacII CCGCGG 1 cut(s) 732
SaqAI TTAA 2 cut(s) 474, 781
SatI GCNGC 4 cut(s) 152, 204, 218, 232
Sau3AI GATC 4 cut(s) 97, 107, 276, 560
Sau96I GGNCC 5 cut(s) 24, 44, 442, 447, 448
SchI GAGTC 2 cut(s) 173, 194
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 3 cut(s) 78, 439, 451
SetI ASST 6 cut(s) 258, 574, 586, 638, 672, 773
SfaNI GCATC 2 cut(s) 29, 215
SfcI CTRYAG 1 cut(s) 247
Sfr303I CCGCGG 1 cut(s) 732
SgrBI CCGCGG 1 cut(s) 732
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 211, 484
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 646
SspMI CTAG 2 cut(s) 195, 578
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 2 cut(s) 194, 675
TaiI ACGT 2 cut(s) 574, 672
TaqI TCGA 2 cut(s) 106, 544
TaqII GACCGA 1 cut(s) 90
TasI AATT 1 cut(s) 646
TauI GCSGC 3 cut(s) 154, 220, 234
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 2 cut(s) 474, 781
Tru9I TTAA 2 cut(s) 474, 781
TscAI CASTG 1 cut(s) 365
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 741
TspRI CASTG 1 cut(s) 365
Tth111I GACNNNGTC 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 646
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 2 cut(s) 195, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.