Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018962

Physical Location & Seq

Genomic Coordinates Reverse (-)

17319732 .. 17320845

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGATTCTGAATAATGGCGGGCCTTCAGAGCAGAGGCAGGGTCCAGGGAAGGAGGATGGGTTTTTGATCTCAGGTTGGGCAGATTGTGCTGTCCCTCTTAGATCAGGGGAGACGGAGGGTGCGGTGCAACTACGAGTTGCTTCTTTCCTGCGGTGGGATCTGGCATTTCCGACTTGGCGATCTGGGTTGTGGCAAAGGAGATTGAAACTCAGCAGTGGCGATCCCCGTTGGGATATGTTTCAGTCTTGGGTTTGGATATGGTTGAGGTTGTCAATAAGGTGCCGTGTTTGTCTGCAACTTGGCCAAGCAGAGTGGCTGCGTAGGGATGCGGCGAGGCTGCGGAGTCATGACAATGGAGATAGCCAGCGGCGGGAATGGTTGTCGACTGCGCTTGCTCTCTGTTGGGAGAAGCGGTGGTTGGGCCAAGCCTTTGTTTTTGGGCCTTGCTGGTGTTGTGTTGTTTCCAGTGTTTCAAGATTTAGTTATTTCTTTTCAGTTGTTGTTTTGTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.9

Weight (kDa)

9.43

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149511 RchiOBHm_Chr3g0471491 RchiOBHm_Chr4g0427061 RchiOBHm_Chr4g0440021 RchiOBHm_Chr7g0242141
rosa_multiflora	Rmu_sc0003272.1_g000010 Rmu_sc0004898.1_g000008 Rmu_ssc0000309.1_g000009
rosa_roxburghii	Rroxscaffold_3G00236630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	8 cut(s)	21, 125, 154, 332, 343, 370, 373, 415
AclWI	GGATC	2 cut(s)	168, 218
AcoI	YGGCCR	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	157, 373
AgsI	TTSAA	2 cut(s)	208, 477
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	168, 218
AoxI	GGCC	4 cut(s)	23, 304, 424, 443
ApeKI	GCWGC	2 cut(s)	319, 340
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	4 cut(s)	23, 44, 424, 443
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	306, 327
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	4 cut(s)	320, 333, 341, 371
BlsI	GCNGC	4 cut(s)	321, 334, 342, 372
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	4 cut(s)	23, 44, 424, 443
BmiI	GGNNCC	2 cut(s)	45, 284
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 373
Bse1I	ACTGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	64, 334
BseLI	CCNNNNNNNGG	2 cut(s)	157, 373
BseMII	CTCAG	2 cut(s)	87, 226
BseNI	ACTGG	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	306, 327
BshFI	GGCC	4 cut(s)	25, 306, 426, 445
BshNI	GGYRCC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	157, 373
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	25, 306, 426, 445
Bsp143I	GATC	5 cut(s)	69, 104, 160, 182, 223
BspACI	CCGC	8 cut(s)	21, 125, 154, 332, 343, 370, 373, 415
BspANI	GGCC	4 cut(s)	25, 306, 426, 445
BspCNI	CTCAG	2 cut(s)	86, 225
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	45, 284
BspPI	GGATC	2 cut(s)	168, 218
BspT107I	GGYRCC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	5 cut(s)	69, 104, 160, 182, 223
Bst2UI	CCWGG	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	23, 368, 396
BstDEI	CTNAG	3 cut(s)	73, 101, 212
BstF5I	GGATG	2 cut(s)	64, 334
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	5 cut(s)	72, 107, 163, 185, 226
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	5 cut(s)	69, 104, 160, 182, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 89
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	306, 327
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	4 cut(s)	25, 306, 426, 445
BtsCI	GGATG	2 cut(s)	64, 334
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 475
Cac8I	GCNNGC	3 cut(s)	23, 368, 396
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	4 cut(s)	23, 44, 424, 443
CspCI	CAANNNNNGTGG	2 cut(s)	296, 331
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	25, 306, 319, 340, 366, 426, 431, 445
CviKI_1	RGCY	8 cut(s)	25, 306, 319, 340, 366, 426, 431, 445
DdeI	CTNAG	3 cut(s)	73, 101, 212
DpnI	GATC	5 cut(s)	71, 106, 162, 184, 225
DpnII	GATC	5 cut(s)	69, 104, 160, 182, 223
EaeI	YGGCCR	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	1 cut(s)	353
FaiI	YATR	3 cut(s)	239, 262, 351
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	349
FauI	CCCGC	2 cut(s)	14, 366
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	320, 333, 341, 371
FokI	GGATG	2 cut(s)	71, 341
Fsp4HI	GCNGC	4 cut(s)	320, 333, 341, 371
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	4 cut(s)	320, 333, 341, 371
HaeIII	GGCC	4 cut(s)	25, 306, 426, 445
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	2 cut(s)	7, 346
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	12, 31, 174
Hpy188III	TCNNGA	2 cut(s)	350, 477
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	36, 46
HpyCH4V	TGCA	2 cut(s)	130, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 89
HpyF3I	CTNAG	3 cut(s)	73, 101, 212
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	5 cut(s)	69, 104, 160, 182, 223
Lsp1109I	GCAGC	2 cut(s)	306, 327
LweI	GCATC	1 cut(s)	319
MalI	GATC	5 cut(s)	71, 106, 162, 184, 225
MboI	GATC	5 cut(s)	69, 104, 160, 182, 223
MflI	RGATCY	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	306
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	6 cut(s)	30, 49, 108, 112, 261, 330
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	31, 89
NdeII	GATC	5 cut(s)	69, 104, 160, 182, 223
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	45, 284
PagI	TCATGA	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	321, 334, 342, 372
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	45, 284
PspPI	GGNCC	4 cut(s)	23, 44, 424, 443
PsuI	RGATCY	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	385
SatI	GCNGC	4 cut(s)	320, 333, 341, 371
Sau3AI	GATC	5 cut(s)	69, 104, 160, 182, 223
Sau96I	GGNCC	4 cut(s)	23, 44, 424, 443
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	3 cut(s)	79, 272, 284
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	354
SsiI	CCGC	8 cut(s)	21, 125, 154, 332, 343, 370, 373, 415
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	1 cut(s)	386
TauI	GCSGC	2 cut(s)	335, 373
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	2 cut(s)	223, 475
TseI	GCWGC	2 cut(s)	319, 340
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	223, 475
VpaK11BI	GGWCC	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.