Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018962

Physical Location & Seq

Genomic Coordinates Reverse (-)

23995699 .. 23997018

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAAGACAATCTTAAATCAGCAACTCTAACGAGACGTGGTCCGGGGGAGGAGGGGGGGTTCTCGACCTCGGGTTGGGCGGATCGATCTCGATCCGTCCCTCTCGATAGGGAGCGACGGAGGTTCGGGGCCGTGGGCAATTTCTTTCTTCCCTACCGTGGGTTCGGTGTCATCGATCGGGCGAGTTGGATTATGGTGAATGCGATCAAATCGTGGCGAAGGGATCCCGTTTGGGATCTATTCTTGTTATGGTTCGGATCCGGATGCGGTCATCATCCGGGTGTAGAAGCCGCTCGCTTTTTGGCAAAGTGGAGGGGGTGGTATGGGGGATGTGGTGAGGCCGCGAGGGTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

10.51

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149511 RchiOBHm_Chr3g0471491 RchiOBHm_Chr4g0427061 RchiOBHm_Chr4g0440021 RchiOBHm_Chr7g0242141
rosa_multiflora	Rmu_sc0003272.1_g000010 Rmu_sc0004898.1_g000008 Rmu_ssc0000309.1_g000009
rosa_roxburghii	Rroxscaffold_3G00236630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	293
AccII	CGCG	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	4 cut(s)	80, 267, 291, 342
AclWI	GGATC	7 cut(s)	87, 90, 218, 231, 243, 252, 265
AfiI	CCNNNNNNNGG	3 cut(s)	75, 158, 159
AjiI	CACGTC	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	7 cut(s)	87, 90, 218, 231, 243, 252, 265
Ama87I	CYCGRG	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	2 cut(s)	129, 339
AspS9I	GGNCC	2 cut(s)	41, 129
AsuC2I	CCSGG	2 cut(s)	45, 279
AsuHPI	GGTGA	2 cut(s)	208, 347
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	41
BamHI	GGATCC	2 cut(s)	223, 257
BceAI	ACGGC	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	45, 279
BcoDI	GTCTC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	291, 342
BlsI	GCNGC	2 cut(s)	292, 343
Bme1390I	CCNGG	2 cut(s)	45, 279
Bme18I	GGWCC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	41, 129
BmiI	GGNNCC	3 cut(s)	130, 225, 259
BmrFI	CCNGG	2 cut(s)	45, 279
BmsI	GCATC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	45, 279
Bsa29I	ATCGAT	2 cut(s)	85, 174
BsaBI	GATNNNNATC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	44, 69, 132, 157
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 158, 159
Bse8I	GATNNNNATC	1 cut(s)	91
BseAI	TCCGGA	1 cut(s)	260
BseCI	ATCGAT	2 cut(s)	85, 174
BseDI	CCNNGG	4 cut(s)	44, 69, 132, 157
BseGI	GGATG	3 cut(s)	269, 274, 335
BseJI	GATNNNNATC	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	75, 158, 159
BseRI	GAGGAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	131, 341
BshVI	ATCGAT	2 cut(s)	85, 174
BsiEI	CGRYCG	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	44, 261, 278
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	75, 158, 159
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	131, 341
BsoBI	CYCGRG	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
BspACI	CCGC	4 cut(s)	80, 267, 291, 342
BspANI	GGCC	2 cut(s)	131, 341
BspDI	ATCGAT	2 cut(s)	85, 174
BspEI	TCCGGA	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	130, 225, 259
BspPI	GGATC	7 cut(s)	87, 90, 218, 231, 243, 252, 265
BsrBI	CCGCTC	1 cut(s)	293
BssECI	CCNNGG	4 cut(s)	44, 69, 132, 157
BssMI	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	295
BstDSI	CCRYGG	2 cut(s)	132, 157
BstF5I	GGATG	3 cut(s)	269, 274, 335
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	8 cut(s)	85, 89, 95, 178, 207, 226, 238, 260
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
BstMCI	CGRYCG	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	43, 277
BstUI	CGCG	1 cut(s)	344
BstX2I	RGATCY	3 cut(s)	223, 235, 257
BstYI	RGATCY	3 cut(s)	223, 235, 257
Bsu15I	ATCGAT	2 cut(s)	85, 174
BsuRI	GGCC	2 cut(s)	131, 341
BsuTUI	ATCGAT	2 cut(s)	85, 174
BtgI	CCRYGG	2 cut(s)	132, 157
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	269, 274, 335
Cac8I	GCNNGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	41, 129
ClaI	ATCGAT	2 cut(s)	85, 174
CviJI	RGCY	3 cut(s)	131, 290, 341
CviKI_1	RGCY	3 cut(s)	131, 290, 341
DpnI	GATC	8 cut(s)	84, 88, 94, 177, 206, 225, 237, 259
DpnII	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
EciI	GGCGGA	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	28
FaiI	YATR	3 cut(s)	194, 250, 324
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	291, 342
FokI	GGATG	3 cut(s)	261, 276, 342
Fsp4HI	GCNGC	2 cut(s)	291, 342
GluI	GCNGC	2 cut(s)	291, 342
HaeIII	GGCC	2 cut(s)	131, 341
HapII	CCGG	3 cut(s)	44, 261, 278
HpaII	CCGG	3 cut(s)	44, 261, 278
HphI	GGTGA	2 cut(s)	208, 347
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	4 cut(s)	64, 90, 104, 261
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	260
Kzo9I	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	57, 274, 291
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	1 cut(s)	37
MalI	GATC	8 cut(s)	84, 88, 94, 177, 206, 225, 237, 259
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	3 cut(s)	223, 235, 257
MluCI	AATT	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	43, 46, 79, 111, 114, 306, 331, 339
MroI	TCCGGA	1 cut(s)	260
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	3 cut(s)	44, 261, 278
MspR9I	CCNGG	2 cut(s)	45, 279
Mva1269I	GAATGC	1 cut(s)	205
MvnI	CGCG	1 cut(s)	344
NciI	CCSGG	2 cut(s)	45, 279
NdeII	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
NlaIV	GGNNCC	3 cut(s)	130, 225, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	292, 343
Ple19I	CGATCG	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	130, 225, 259
PspPI	GGNCC	2 cut(s)	41, 129
PsuI	RGATCY	3 cut(s)	223, 235, 257
PsyI	GACNNNGTC	1 cut(s)	39
PvuI	CGATCG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	291, 342
Sau3AI	GATC	8 cut(s)	82, 86, 92, 175, 204, 223, 235, 257
Sau96I	GGNCC	2 cut(s)	41, 129
ScrFI	CCNGG	2 cut(s)	45, 279
SetI	ASST	3 cut(s)	40, 71, 125
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	4 cut(s)	80, 267, 291, 342
StyD4I	CCNGG	2 cut(s)	43, 277
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	5 cut(s)	65, 85, 91, 105, 174
TasI	AATT	1 cut(s)	139
TauI	GCSGC	2 cut(s)	293, 344
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	85, 133
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.