RchiOBHm_Chr4g0440021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018962
Physical Location & Seq
Forward (+)
62296738 .. 62297486
749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40805

Sequence Viewer

Length: 639 bp
ATGGAGGTTGTGGGGATGCAGCAAATTGCTTCTGGCCAGCGGTGGGAGATGGCATCATCGAAGGAGCGATCTGGGTTATGGTGGATGCAGGCAACTCGTGGCAGAAGGGATCCCCGTTTGGATATGTTTCTAATCGGTATGCATATTGGCAAGGTGGAGCGACGGTACCAGGAAACTGCGAGGCCGTGGGGTGGTGTTGATGGTGCTTGCCCGCGGCGGGATTGGTTTTCTACATTGGTGGATTGCTGCTCGAGGAAGTGGGAGTTGGGCGGGGCCCCTGTTTTTAGGCCTTGCTGGTGTTTAATAAATCCCTACTCTTCTGAGCTAGGGTTGGTCTGCTACTCTGTTGAGATAGGAGTTGGTCTAGGTGTTCTGCCATGTAAATGGTGTCATTTCCGAGAACGAGGACGATTGTGTTCAACTCTGGTTTACTTTTGTTGTCAATTTGCTAGTATGCGATCCTTTACACGTGGTCTACTACCTTCGGACACGGTGTTGAAGAGGACGTTGCCTTCTTTGCGGTTGATTATATGGTTTTACTGGAATTTTCAGGTTCAAATGCTCAAAGTAGCCTTGGAAATGGGCGTTTGGGCCCTTTGGCCTGATGGTCTCTGTAACCGCTGTTTCTTTATACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.63

Weight (kDa)

9.15

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 475
AccII CGCG 1 cut(s) 214
AciI CCGC 7 cut(s) 40, 212, 214, 217, 270, 520, 619
AclWI GGATC 3 cut(s) 104, 117, 453
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 544
AcvI CACGTG 1 cut(s) 470
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 43, 191, 217
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 3 cut(s) 420, 499, 557
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 3 cut(s) 104, 117, 453
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 6 cut(s) 34, 182, 273, 287, 591, 599
ApaI GGGCCC 2 cut(s) 277, 595
ApeKI GCWGC 2 cut(s) 19, 246
ApoI RAATTY 1 cut(s) 544
Asp718I GGTACC 1 cut(s) 165
AspS9I GGNCC 4 cut(s) 273, 274, 591, 592
AvaI CYCGRG 1 cut(s) 250
BaeGI GKGCMC 2 cut(s) 277, 595
BalI TGGCCA 1 cut(s) 36
BamHI GGATCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 2 cut(s) 277, 595
BauI CACGAG 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 470
BbvI GCAGC 2 cut(s) 31, 233
BccI CCATC 3 cut(s) 43, 194, 599
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 3 cut(s) 326, 365, 450
BisI GCNGC 3 cut(s) 20, 215, 247
BlsI GCNGC 3 cut(s) 21, 216, 248
Bme1390I CCNGG 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 4 cut(s) 273, 274, 591, 592
BmiI GGNNCC 6 cut(s) 111, 167, 274, 275, 276, 593
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 3 cut(s) 6, 62, 75
BsaAI YACGTR 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 185, 212, 573
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 191, 217
Bse1I ACTGG 1 cut(s) 545
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 185, 212, 573
BseGI GGATG 2 cut(s) 21, 90
BseLI CCNNNNNNNGG 3 cut(s) 43, 191, 217
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 545
BseSI GKGCMC 2 cut(s) 277, 595
BseXI GCAGC 2 cut(s) 31, 233
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 6 cut(s) 36, 184, 275, 289, 593, 601
BshNI GGYRCC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 43, 191, 217
BsmAI GTCTC 1 cut(s) 614
BsnI GGCC 6 cut(s) 36, 184, 275, 289, 593, 601
Bso31I GGTCTC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 250
Bsp120I GGGCCC 2 cut(s) 273, 591
Bsp1286I GDGCHC 2 cut(s) 277, 595
Bsp143I GATC 3 cut(s) 68, 109, 458
BspACI CCGC 7 cut(s) 40, 212, 214, 217, 270, 520, 619
BspANI GGCC 6 cut(s) 36, 184, 275, 289, 593, 601
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 6 cut(s) 111, 167, 274, 275, 276, 593
BspPI GGATC 3 cut(s) 104, 117, 453
BspT107I GGYRCC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 614
BsrI ACTGG 1 cut(s) 545
BssECI CCNNGG 3 cut(s) 185, 212, 573
BssMI GATC 3 cut(s) 68, 109, 458
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 165, 493
Bst6I CTCTTC 2 cut(s) 322, 494
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 4 cut(s) 38, 90, 208, 212
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 2 cut(s) 185, 212
BstF5I GGATG 2 cut(s) 21, 90
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 3 cut(s) 71, 112, 461
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 68, 109, 458
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 277, 595
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 31, 233
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 384
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 6 cut(s) 36, 184, 275, 289, 593, 601
BtgI CCRYGG 2 cut(s) 185, 212
BtsCI GGATG 2 cut(s) 21, 90
Cac8I GCNNGC 4 cut(s) 38, 90, 208, 212
Cfr13I GGNCC 4 cut(s) 273, 274, 591, 592
Cfr42I CCGCGG 1 cut(s) 215
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 378
CviJI RGCY 8 cut(s) 36, 184, 275, 289, 325, 572, 593, 601
CviKI_1 RGCY 8 cut(s) 36, 184, 275, 289, 325, 572, 593, 601
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 70, 111, 460
DpnII GATC 3 cut(s) 68, 109, 458
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 322, 494
EarI CTCTTC 2 cut(s) 322, 494
Eco130I CCWWGG 1 cut(s) 573
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 2 cut(s) 277, 595
Eco31I GGTCTC 1 cut(s) 614
Eco72I CACGTG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 250
EcoO109I RGGNCCY 3 cut(s) 273, 274, 592
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 144
EcoT38I GRGCYC 2 cut(s) 277, 595
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 1 cut(s) 381
FaiI YATR 9 cut(s) 79, 125, 140, 144, 379, 455, 530, 532, 632
FatI CATG 1 cut(s) 377
FauI CCCGC 3 cut(s) 210, 219, 263
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 3 cut(s) 20, 215, 247
FokI GGATG 2 cut(s) 28, 97
FriOI GRGCYC 2 cut(s) 277, 595
Fsp4HI GCNGC 3 cut(s) 20, 215, 247
FspBI CTAG 3 cut(s) 326, 365, 450
GluI GCNGC 3 cut(s) 20, 215, 247
HaeIII GGCC 6 cut(s) 36, 184, 275, 289, 593, 601
Hin1II CATG 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 430, 476
Hpy188I TCNGA 3 cut(s) 322, 398, 487
Hpy8I GTNNAC 2 cut(s) 430, 476
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 4 cut(s) 55, 99, 492, 522
HpyCH4III ACNGT 2 cut(s) 165, 493
HpyCH4IV ACGT 2 cut(s) 469, 506
HpyCH4V TGCA 3 cut(s) 19, 88, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 469, 506
Hsp92II CATG 1 cut(s) 381
KpnI GGTACC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 215
Kzo9I GATC 3 cut(s) 68, 109, 458
LmnI GCTCC 2 cut(s) 64, 157
Lsp1109I GCAGC 2 cut(s) 31, 233
LweI GCATC 3 cut(s) 6, 62, 75
MaeI CTAG 3 cut(s) 326, 365, 450
MaeII ACGT 2 cut(s) 469, 506
MaeIII GTNAC 1 cut(s) 614
MalI GATC 3 cut(s) 70, 111, 460
MboI GATC 3 cut(s) 68, 109, 458
MboII GAAGA 2 cut(s) 309, 511
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 277, 595
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 3 cut(s) 24, 443, 544
MluNI TGGCCA 1 cut(s) 36
MnlI CCTC 4 cut(s) 174, 246, 398, 495
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 144
MscI TGGCCA 1 cut(s) 36
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 36
MspA1I CMGCKG 3 cut(s) 40, 214, 621
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 517
NdeII GATC 3 cut(s) 68, 109, 458
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 6 cut(s) 111, 167, 274, 275, 276, 593
NsiI ATGCAT 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 250
PceI AGGCCT 1 cut(s) 289
PkrI GCNGC 3 cut(s) 21, 216, 248
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 168
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 6 cut(s) 111, 167, 274, 275, 276, 593
PspOMI GGGCCC 2 cut(s) 273, 591
PspPI GGNCC 4 cut(s) 273, 274, 591, 592
PspXI VCTCGAGB 1 cut(s) 250
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 382
SacII CCGCGG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 3 cut(s) 20, 215, 247
Sau3AI GATC 3 cut(s) 68, 109, 458
Sau96I GGNCC 4 cut(s) 273, 274, 591, 592
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 277, 595
SetI ASST 8 cut(s) 9, 156, 327, 370, 472, 484, 509, 555
SfaNI GCATC 3 cut(s) 6, 62, 75
Sfr274I CTCGAG 1 cut(s) 250
Sfr303I CCGCGG 1 cut(s) 215
SgrBI CCGCGG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 3 cut(s) 24, 443, 544
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 7 cut(s) 40, 212, 214, 217, 270, 520, 619
SspMI CTAG 3 cut(s) 326, 365, 450
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 165, 493
TaiI ACGT 2 cut(s) 472, 509
TaqI TCGA 2 cut(s) 59, 251
TasI AATT 3 cut(s) 24, 443, 544
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseI GCWGC 2 cut(s) 19, 246
XapI RAATTY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 3 cut(s) 326, 365, 450
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.