Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011023

Physical Location & Seq

Genomic Coordinates Reverse (-)

85663566 .. 85671047

Gene Structure 7482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53950

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3579 bp

ATGCCGAGAGGGCGAAGGAGGACGATACATTTCAGTAAATTGTACTCGTTTTCGTGTATTCGGTCTTCTTTCGAAGATGTTCATGCCAAAATTGGGGATAGGGGGTACTCTAGGGTTGTGTACTGTAATGATCCTGATAATTCCGAGGCGCTGCAGTTGAGGTACAGGGGGAACTATGTTTCGACTACCAAGTATACGGCGGCTAATTTCATTCCAAAGTCTTTGTTTGAGCAGTTTAGGAGGGTGGCAAATATATACTTTCTTGTTGTGGCTTTTGTTTCGTTCAGTCCGTTGGCGCCTTTTAAGGCTGTTAGTGTTCTTATACCGCTATTGGTGGTGATTGGAGCTACTATGGTTAAGGAAGCTATAGAAGATTGGAGGCGAAGAAAACAGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATCATACATTCATTGGAACCAGATGGAAGAAACTCAGAGTTGGTGATCTTGTGAAGGTGCACAAGGATGAGTACTTTCCTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAAGCATGCACTGGAGGCGACATCCCCTCTTCAAGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATGAAAATCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAGAATACCCACTTTCCTTGCAACAGATGCTCCTAAGAGACTCTAAGCTGAAAAATACAGAATATGTCTATGGAGTTGTTGTTTTCACTGGCCATGACACAAAAGTCATGGAAAATGCTACAGATCCTCCTTCAAAGAGAAGTAAAATTGAGAGGAAAATGGATAAGATAATCTACATCCTTTTCAGTACTCTATTTGTGATAGCTTTTGTTGGATCTGTCTTTTTTGGAATTGATACCAAGAAAGATTATAGCGGTGGAAAGATGAGAAGGTGGTATCTTCGTCCAGATGATTCCGCTGTGTATTATGACCCCAAAAGGGCAGAAATTGCAGCTATTTTGCATTTTCTGACAGCTCTTATGCTGTATGGATATCTGATACCAATATCTTTATATGTTTCAATTGAGATGGTGAAGGTATTACAGAGTATTTTCATTAACCGAGATCAAGATATGTACTATGAGGAAACAGATAGGCCAGCTCATGCACGCACCTCTAATCTGAATGAGGAACTTGGCCAGATTGATATGATACTGTCTGACAAAACTGGTACATTGACATGCAACTCCATGGAGTTTATTAAATGTTCGATAGCAGGCACTGCTTATGGCCATGGTAAGACAGAAGTGGAAATGGCACTGGCAAACAGAAGGAACGGAGTGGCTGAAACTGGTCATATATCATCTGATGTGGTAGAGCATAGTACTGGTGAAGCTGATAGCTCTCGAAAGTCAATTAAGGGTTTCAACTTCAGGGACGAGCGCATCATGAATGGGCACTGGGTTAATGAACCTCATTCAGATACCATCCAGAAATTCCTTCGGGTTTTAGCAATCTGTCATACAGCCATACCTGTTGTGGATAAAGAATCAGGAGAAATATCCTATGAAGCTGAGTCACCAGATGAAGCAGCTTTTGTCATAGCTGCCAGGGAGCTCGGCTTTGAGTTTTTTGAAAGGACACAAACGAGCATATCATTGCATGAGTTAGATTATGAGACTGGAGAAAAGGTTGACAGAGAATATGAGCTTCTTCAAGTCTTAGAGTTCAGTAGTTCTCGCAAAAGAATGTCAGTAATTGTTAAGAGTCCGGAAAACAAATTATTGCTTCTTTGCAAAGGTGCAGACAGTGCAATTTTTGAAAGGCTGGCAAAAGATGGGCGGCAGTTTGAGGATCAAACTAAGGAGCACATTCACAAATATGCTGAAGCAGGTTTACGAACCTTGGTGGTTGCACACCGTGAGCTTGGTCTAGAAGAATATAAAGCATGGGAACAAAAGTTTTTAAAGGCCAAAGCTTCTCTCACTGAAGGCCGAGATGCATTAATGGATGAGCTTGCTGATAAGATTGAAAGGGAATTAATACTACTTGGTGTGACAGCTGTTGAGGACAAACTGCAAAAGGGGGTTCCTGAGTGTATCAACAAGCTTGCTCAGGCTGGGATTAAGATATGGGTATTGACTGGTGATAAGATGGAAACTGCAGTTAACATAGGGTATGCTTGCAGTTTACTTAGACAAGATATGAAACGGATTGTCATCAGTCTTGATTCGCCAGATATAATTGCCTTGGAAAAACAAGGGAAGAAAGACGCAATTCAGAAGGCCTGTCTTGCAAGCATAAGGAAGCAAATTGAAGAAGGTTTTTCGCAAATTAATGAAGCTAAAAAAGGTTCCAGCTCCACTAAAGCATTTGGCTTAATAATTGATGGAAAGTCCTTGGAATATTCACTTAAGAAGGACCTGGAAAAGTCATTTTTTGAGCTTGCAATTAATTGTGCTTCAGTTATATGCTGCCGCTCTACGCCCAAACAGAAAGCTCTTGTTACGAGACTGGTAAAAAATGAGACAGGTAAAACAACACTTGCTGTTGGTGATGGGGCGAATGATGTTGGCATGCTTCAAGAGGCGGATATTGGAGTTGGCATTAGTGGTGTTGAAGGGATGCAGGCAGTGATGGCAAGTGATTTTGCAATAGCTCAATTTCGTTTTCTGGAGCGTCTCTTGCTGGTACACGGGCATTGGTGTTACAGGCGTATATCAATGATGATATGCTACTTCTTCTACAAGAACATAACATTCGGGTTTACTCTGTTTTGGTTTGAGGCCCATAATTCTTTCTCGGGTCTACCTGCTTATAATGATTGGTACATGTCATTCTACAATGTCTTCTTCACATCACTTCCTGTAATTGCTCTTGGTGTCTTCGATCAGGATGTTTCTGCACGGCTATGCCTGAAGTACCCATCCTTGTATCTAGAGGGAGTGGAGAACATTCTCTTCAGCTGGACCCGCATACTCGGTTGGATGTTTAATGGATTGTTGAGCTCCATAATAATCTTCTTCTTCACCACCAATTCTATGATTCCACAGCCGTTTCAGAAAGATGGTCAAGTAGCTGACTATGAAGTCCTAGGTGTCACAATGTACACTTGTGTAGTGTGGGCTGTAAACTGCCAAATGGCAATCTCCATCAACTACTTCACTTGGATCCAGCACTTGTTCATCTGGGGCAGTGTCGCCTTCTGGTACATATTTTTAGTCATATATGGTTCTGTCTCACCTAGTATATCCACAACAGCATACAAAGTGCTCGTGGAAGAGTGTGCTCCCAGTCCTCTTTATTGGCTGGTCACCCTTCTTGTTGTTGTCTGCACTCTGCTGCCATATTTTTCATACCGTGCTTTCCAGACACGGTTTAAACCAATGCGTCACGATGTAATACAGCAGAAACGATTACTAAGTTGTAACAATGATCAGATTGATGCTTCCGGTGAATTGCCTGTAAGAGTGAGGGGCAAGCTACGACATCTGAGGCATAGATTAAGAGAAAGAGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1192

Amino Acids

135.95

Weight (kDa)

7.87

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	40 - 105	4.7e-22	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	515 - 713	1.5e-20	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	643 - 780	4.2e-06	haloacid dehalogenase-like hydrolase
PhoLip_ATPase_C	PF16212	897 - 1147	8.3e-93	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27870 AT3G27870 AT3G27870
fragaria_vesca	FvH4_6g50810
malus_domestica	MD09G1032100.v1.1 MD17G1033800.v1.1
prunus_persica	Prupe.3G285900_v2.0.a1 Prupe.3G285900_v2.0.a1
pyrus_communis	pycom111g02540
rosa_chinensis	RchiOBHm_Chr2g0172201
rosa_laevigata	RLG00000022092
rosa_multiflora	Rmu_ssc0000252.1_g000050
rosa_roxburghii	Rroxscaffold_2G00080090
rosa_rugosa	Rorug02G0557000 Rorug02G0557100 Rorug02G0557200
rosa_samantha	Rh2AG632600 Rh2BG646200 Rh2DG660800
rosa_wichuraiana	Rw2G052370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2874
AasI	GACNNNNNNGTC	2 cut(s)	839, 3143
Acc36I	ACCTGC	2 cut(s)	1937, 2875
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	2535
AccI	GTMKAC	2 cut(s)	194, 2863
AccIII	TCCGGA	1 cut(s)	1825
AciI	CCGC	8 cut(s)	200, 326, 990, 1032, 1897, 2533, 2645, 3028
AclWI	GGATC	6 cut(s)	125, 854, 958, 1917, 3220, 3233
AcoI	YGGCCR	3 cut(s)	826, 1252, 1345
AcsI	RAATTY	3 cut(s)	595, 646, 1550
AcuI	CTGAAG	6 cut(s)	1471, 1962, 2064, 2502, 2993, 3001
AcyI	GRCGYC	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	1976
AfiI	CCNNNNNNNGG	2 cut(s)	93, 1054
AflII	CTTAAG	1 cut(s)	2468
AflIII	ACRYGT	1 cut(s)	2886
AjnI	CCWGG	2 cut(s)	1664, 2478
Alw21I	GWGCWC	6 cut(s)	498, 1674, 1926, 3065, 3330, 3346
Alw26I	GTCTC	6 cut(s)	768, 1727, 2560, 2576, 2741, 3298
Alw44I	GTGCAC	1 cut(s)	494
AlwI	GGATC	6 cut(s)	125, 854, 958, 1917, 3220, 3233
AlwNI	CAGNNNCTG	1 cut(s)	1337
Ama87I	CYCGRG	1 cut(s)	2857
Aor13HI	TCCGGA	1 cut(s)	1825
AoxI	GGCC	8 cut(s)	826, 1211, 1252, 1345, 2025, 2047, 2340, 2841
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	6 cut(s)	151, 1067, 1646, 1661, 2529, 3397
ApoI	RAATTY	3 cut(s)	595, 646, 1550
AseI	ATTAAT	4 cut(s)	2060, 2096, 2391, 2508
Asp700I	GAANNNNTTC	1 cut(s)	78
AspA2I	CCTAGG	1 cut(s)	3148
AspLEI	GCGC	3 cut(s)	151, 298, 1500
AspS9I	GGNCC	4 cut(s)	685, 2476, 2842, 3024
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	2857
AvaII	GGWCC	3 cut(s)	685, 2476, 3024
AvrII	CCTAGG	1 cut(s)	3148
BaeGI	GKGCMC	2 cut(s)	498, 1515
BalI	TGGCCA	3 cut(s)	828, 1254, 1347
BamHI	GGATCC	1 cut(s)	3225
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	1674, 3065
BarI	GAAGNNNNNNTAC	4 cut(s)	49, 81, 1935, 1967
BauI	CACGAG	1 cut(s)	3329
BbsI	GAAGAC	3 cut(s)	57, 2896, 2932
Bbv12I	GWGCWC	6 cut(s)	498, 1674, 1926, 3065, 3330, 3346
BbvI	GCAGC	6 cut(s)	138, 1079, 1648, 1658, 2516, 3384
BceAI	ACGGC	4 cut(s)	213, 748, 2978, 3094
BciT130I	CCWGG	2 cut(s)	1666, 2480
BclI	TGATCA	2 cut(s)	672, 3490
BcoDI	GTCTC	6 cut(s)	768, 1727, 2560, 2576, 2741, 3298
BfaI	CTAG	5 cut(s)	111, 1988, 2993, 3149, 3300
BfmI	CTRYAG	4 cut(s)	152, 366, 855, 2217
BfoI	RGCGCY	2 cut(s)	152, 299
BfrI	CTTAAG	1 cut(s)	2468
BfuAI	ACCTGC	2 cut(s)	1937, 2875
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	9 cut(s)	152, 201, 1068, 1647, 1662, 1898, 2530, 2533, 3398
BlnI	CCTAGG	1 cut(s)	3148
BlsI	GCNGC	9 cut(s)	153, 202, 1069, 1648, 1663, 1899, 2531, 2534, 3399
BmcAI	AGTACT	3 cut(s)	509, 925, 1441
Bme1390I	CCNGG	2 cut(s)	1666, 2480
Bme18I	GGWCC	3 cut(s)	685, 2476, 3024
BmeT110I	CYCGRG	1 cut(s)	2857
BmgT120I	GGNCC	4 cut(s)	685, 2476, 2842, 3024
BmiI	GGNNCC	7 cut(s)	297, 454, 687, 2145, 2410, 3026, 3227
BmrFI	CCNGG	2 cut(s)	1666, 2480
BmrI	ACTGGG	2 cut(s)	1525, 3342
BmsI	GCATC	5 cut(s)	753, 1509, 2044, 2670, 3490
BmuI	ACTGGG	2 cut(s)	1525, 3342
BpiI	GAAGAC	3 cut(s)	57, 2896, 2932
BpmI	CTGGAG	3 cut(s)	638, 1758, 2750
Bpu10I	CCTNAGC	1 cut(s)	2169
Bpu14I	TTCGAA	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	2273
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	9 cut(s)	144, 651, 1305, 1348, 1665, 1959, 2304, 2454, 3148
BsaWI	WCCGGW	2 cut(s)	1825, 3506
BsaXI	ACNNNNNCTCC	8 cut(s)	750, 780, 801, 831, 847, 877, 1731, 1761
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 1054
Bse3DI	GCAATG	1 cut(s)	1712
Bse8I	GATNNNNATC	1 cut(s)	2273
BseAI	TCCGGA	1 cut(s)	1825
BseBI	CCWGG	2 cut(s)	1666, 2480
BseDI	CCNNGG	9 cut(s)	144, 651, 1305, 1348, 1665, 1959, 2304, 2454, 3148
BseJI	GATNNNNATC	1 cut(s)	2273
BseLI	CCNNNNNNNGG	2 cut(s)	93, 1054
BseMI	GCAATG	1 cut(s)	1712
BseMII	CTCAG	5 cut(s)	484, 1620, 2139, 2183, 3539
BseSI	GKGCMC	2 cut(s)	498, 1515
BseXI	GCAGC	6 cut(s)	138, 1079, 1648, 1658, 2516, 3384
BseYI	CCCAGC	1 cut(s)	2174
BsgI	GTGCAG	3 cut(s)	1878, 2943, 3373
BshFI	GGCC	8 cut(s)	828, 1213, 1254, 1347, 2027, 2049, 2342, 2843
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	6 cut(s)	498, 1674, 1926, 3065, 3330, 3346
BsiHKCI	CYCGRG	1 cut(s)	2857
BsiSI	CCGG	2 cut(s)	1826, 3507
BslFI	GGGAC	2 cut(s)	730, 1505
BslI	CCNNNNNNNGG	2 cut(s)	93, 1054
BsmAI	GTCTC	6 cut(s)	768, 1727, 2560, 2576, 2741, 3298
BsmBI	CGTCTC	1 cut(s)	2741
BsmFI	GGGAC	2 cut(s)	730, 1505
BsnI	GGCC	8 cut(s)	828, 1213, 1254, 1347, 2027, 2049, 2342, 2843
BsoBI	CYCGRG	1 cut(s)	2857
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	7 cut(s)	498, 1515, 1674, 1926, 3065, 3330, 3346
Bsp13I	TCCGGA	1 cut(s)	1825
Bsp1407I	TGTACA	1 cut(s)	3162
Bsp19I	CCATGG	2 cut(s)	1305, 1348
BspACI	CCGC	8 cut(s)	200, 326, 990, 1032, 1897, 2533, 2645, 3028
BspANI	GGCC	8 cut(s)	828, 1213, 1254, 1347, 2027, 2049, 2342, 2843
BspCNI	CTCAG	5 cut(s)	483, 1621, 2140, 2182, 3540
BspEI	TCCGGA	1 cut(s)	1825
BspHI	TCATGA	2 cut(s)	1503, 3575
BspLI	GGNNCC	7 cut(s)	297, 454, 687, 2145, 2410, 3026, 3227
BspMAI	CTGCAG	2 cut(s)	156, 2221
BspMI	ACCTGC	2 cut(s)	1937, 2875
BspPI	GGATC	6 cut(s)	125, 854, 958, 1917, 3220, 3233
BspT104I	TTCGAA	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	2468
BsrBI	CCGCTC	1 cut(s)	2535
BsrDI	GCAATG	1 cut(s)	1712
BsrGI	TGTACA	1 cut(s)	3162
BssECI	CCNNGG	9 cut(s)	144, 651, 1305, 1348, 1665, 1959, 2304, 2454, 3148
BssNAI	GTATAC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	3329
BssT1I	CCWWGG	7 cut(s)	651, 1305, 1348, 1959, 2304, 2454, 3148
Bst1107I	GTATAC	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	3329
Bst2UI	CCWGG	2 cut(s)	1666, 2480
Bst4CI	ACNGT	6 cut(s)	125, 1272, 1865, 1976, 3416, 3432
Bst6I	CTCTTC	3 cut(s)	639, 3020, 3330
BstACI	GRCGYC	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	2468
BstAPI	GCANNNNNTGC	4 cut(s)	763, 1064, 1337, 1865
BstAUI	TGTACA	1 cut(s)	3162
BstBI	TTCGAA	1 cut(s)	72
BstDSI	CCRYGG	2 cut(s)	1305, 1348
BstEII	GGTNACC	1 cut(s)	3367
BstH2I	RGCGCY	2 cut(s)	152, 299
BstHHI	GCGC	3 cut(s)	151, 298, 1500
BstMAI	GTCTC	6 cut(s)	768, 1727, 2560, 2576, 2741, 3298
BstNI	CCWGG	2 cut(s)	1666, 2480
BstNSI	RCATGY	4 cut(s)	614, 1299, 2635, 2890
BstPI	GGTNACC	1 cut(s)	3367
BstSCI	CCNGG	2 cut(s)	1664, 2478
BstSFI	CTRYAG	4 cut(s)	152, 366, 855, 2217
BstSLI	GKGCMC	2 cut(s)	498, 1515
BstV1I	GCAGC	6 cut(s)	138, 1079, 1648, 1658, 2516, 3384
BstV2I	GAAGAC	3 cut(s)	57, 2896, 2932
BstX2I	RGATCY	3 cut(s)	859, 950, 3225
BstYI	RGATCY	3 cut(s)	859, 950, 3225
BstZ17I	GTATAC	1 cut(s)	195
BsuRI	GGCC	8 cut(s)	828, 1213, 1254, 1347, 2027, 2049, 2342, 2843
BtgI	CCRYGG	2 cut(s)	1305, 1348
BtsI	GCAGTG	4 cut(s)	675, 1335, 2694, 3256
BveI	ACCTGC	2 cut(s)	1937, 2875
CaiI	CAGNNNCTG	1 cut(s)	1337
CciI	TCATGA	2 cut(s)	1503, 3575
CfoI	GCGC	3 cut(s)	151, 298, 1500
Cfr13I	GGNCC	4 cut(s)	685, 2476, 2842, 3024
CseI	GACGC	3 cut(s)	2336, 2723, 3434
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
DinI	GGCGCC	1 cut(s)	297
DraI	TTTAAA	3 cut(s)	600, 2022, 3436
DraIII	CACNNNGTG	1 cut(s)	1976
DrdI	GACNNNNNNGTC	2 cut(s)	839, 3143
DseDI	GACNNNNNNGTC	2 cut(s)	839, 3143
EaeI	YGGCCR	3 cut(s)	826, 1252, 1345
Eam1104I	CTCTTC	3 cut(s)	639, 3020, 3330
EarI	CTCTTC	3 cut(s)	639, 3020, 3330
EciI	GGCGGA	1 cut(s)	2660
Ecl136II	GAGCTC	2 cut(s)	1672, 3063
Eco130I	CCWWGG	7 cut(s)	651, 1305, 1348, 1959, 2304, 2454, 3148
Eco147I	AGGCCT	1 cut(s)	2342
Eco24I	GRGCYC	2 cut(s)	1674, 3065
Eco32I	GATATC	1 cut(s)	1109
Eco47I	GGWCC	3 cut(s)	685, 2476, 3024
Eco53kI	GAGCTC	2 cut(s)	1672, 3063
Eco57I	CTGAAG	6 cut(s)	1471, 1962, 2064, 2502, 2993, 3001
Eco88I	CYCGRG	1 cut(s)	2857
Eco91I	GGTNACC	1 cut(s)	3367
EcoICRI	GAGCTC	2 cut(s)	1672, 3063
EcoO109I	RGGNCCY	2 cut(s)	685, 2476
EcoO65I	GGTNACC	1 cut(s)	3367
EcoRII	CCWGG	2 cut(s)	1664, 2478
EcoRV	GATATC	1 cut(s)	1109
EcoT14I	CCWWGG	7 cut(s)	651, 1305, 1348, 1959, 2304, 2454, 3148
EcoT22I	ATGCAT	1 cut(s)	2059
EcoT38I	GRGCYC	2 cut(s)	1674, 3065
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	7 cut(s)	651, 1305, 1348, 1959, 2304, 2454, 3148
Esp3I	CGTCTC	1 cut(s)	2741
FaqI	GGGAC	2 cut(s)	730, 1505
FauI	CCCGC	1 cut(s)	3035
FbaI	TGATCA	2 cut(s)	672, 3490
FblI	GTMKAC	2 cut(s)	194, 2863
Fnu4HI	GCNGC	9 cut(s)	152, 201, 1068, 1647, 1662, 1898, 2530, 2533, 3398
FriOI	GRGCYC	2 cut(s)	1674, 3065
Fsp4HI	GCNGC	9 cut(s)	152, 201, 1068, 1647, 1662, 1898, 2530, 2533, 3398
FspBI	CTAG	5 cut(s)	111, 1988, 2993, 3149, 3300
GlaI	GCGC	3 cut(s)	150, 297, 1499
GluI	GCNGC	9 cut(s)	152, 201, 1068, 1647, 1662, 1898, 2530, 2533, 3398
GsaI	CCCAGC	1 cut(s)	2178
GsuI	CTGGAG	3 cut(s)	638, 1758, 2750
HaeII	RGCGCY	2 cut(s)	152, 299
HaeIII	GGCC	8 cut(s)	828, 1213, 1254, 1347, 2027, 2049, 2342, 2843
HapII	CCGG	2 cut(s)	1826, 3507
HgaI	GACGC	3 cut(s)	2336, 2723, 3434
HhaI	GCGC	3 cut(s)	151, 298, 1500
Hin1I	GRCGYC	1 cut(s)	296
Hin6I	GCGC	3 cut(s)	149, 296, 1498
HinP1I	GCGC	3 cut(s)	149, 296, 1498
HincII	GTYRAC	2 cut(s)	1750, 2224
HindII	GTYRAC	2 cut(s)	1750, 2224
HindIII	AAGCTT	2 cut(s)	2031, 2162
HinfI	GANTC	9 cut(s)	436, 776, 1028, 1604, 1631, 1822, 2285, 3100, 3572
HpaI	GTTAAC	1 cut(s)	2224
HpaII	CCGG	2 cut(s)	1826, 3507
HpyCH4III	ACNGT	6 cut(s)	125, 1272, 1865, 1976, 3416, 3432
Hsp92I	GRCGYC	1 cut(s)	296
HspAI	GCGC	3 cut(s)	149, 296, 1498
KasI	GGCGCC	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	1825
Ksp22I	TGATCA	2 cut(s)	672, 3490
KspAI	GTTAAC	1 cut(s)	2224
LmnI	GCTCC	8 cut(s)	344, 771, 1669, 1921, 2420, 2731, 3068, 3349
Lsp1109I	GCAGC	6 cut(s)	138, 1079, 1648, 1658, 2516, 3384
LweI	GCATC	5 cut(s)	753, 1509, 2044, 2670, 3490
MaeI	CTAG	5 cut(s)	111, 1988, 2993, 3149, 3300
MaeIII	GTNAC	8 cut(s)	1632, 2110, 2560, 2762, 3154, 3367, 3446, 3482
MbiI	CCGCTC	1 cut(s)	2535
MfeI	CAATTG	1 cut(s)	1137
MflI	RGATCY	3 cut(s)	859, 950, 3225
MhlI	GDGCHC	7 cut(s)	498, 1515, 1674, 1926, 3065, 3330, 3346
MlsI	TGGCCA	3 cut(s)	828, 1254, 1347
MluNI	TGGCCA	3 cut(s)	828, 1254, 1347
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	770, 1640, 1831
MmeI	TCCRAC	2 cut(s)	928, 3020
Mox20I	TGGCCA	3 cut(s)	828, 1254, 1347
Mph1103I	ATGCAT	1 cut(s)	2059
MroI	TCCGGA	1 cut(s)	1825
MroXI	GAANNNNTTC	1 cut(s)	78
MscI	TGGCCA	3 cut(s)	828, 1254, 1347
MslI	CAYNNNNRTG	4 cut(s)	501, 1294, 1935, 2965
Msp20I	TGGCCA	3 cut(s)	828, 1254, 1347
MspA1I	CMGCKG	3 cut(s)	1034, 2117, 3021
MspCI	CTTAAG	1 cut(s)	2468
MspI	CCGG	2 cut(s)	1826, 3507
MspR9I	CCNGG	2 cut(s)	1666, 2480
MssI	GTTTAAAC	1 cut(s)	3436
MunI	CAATTG	1 cut(s)	1137
MvaI	CCWGG	2 cut(s)	1666, 2480
NarI	GGCGCC	1 cut(s)	296
NcoI	CCATGG	2 cut(s)	1305, 1348
NlaIV	GGNNCC	7 cut(s)	297, 454, 687, 2145, 2410, 3026, 3227
NmeAIII	GCCGAG	3 cut(s)	30, 1653, 2075
NmuCI	GTSAC	5 cut(s)	1632, 2110, 3154, 3367, 3446
NsiI	ATGCAT	1 cut(s)	2059
NspI	RCATGY	4 cut(s)	614, 1299, 2635, 2890
NspV	TTCGAA	1 cut(s)	72
PaeI	GCATGC	2 cut(s)	614, 2635
PagI	TCATGA	2 cut(s)	1503, 3575
PceI	AGGCCT	1 cut(s)	2342
PciI	ACATGT	1 cut(s)	2886
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	5 cut(s)	436, 1028, 1604, 2285, 3100
PkrI	GCNGC	9 cut(s)	153, 202, 1069, 1648, 1663, 1899, 2531, 2534, 3399
PleI	GAGTC	3 cut(s)	770, 1639, 1830
PluTI	GGCGCC	1 cut(s)	299
PmeI	GTTTAAAC	1 cut(s)	3436
PpsI	GAGTC	3 cut(s)	770, 1639, 1830
PpuMI	RGGWCCY	2 cut(s)	685, 2476
PscI	ACATGT	1 cut(s)	2886
PshBI	ATTAAT	4 cut(s)	2060, 2096, 2391, 2508
PsiI	TTATAA	1 cut(s)	2874
Psp124BI	GAGCTC	2 cut(s)	1674, 3065
Psp5II	RGGWCCY	2 cut(s)	685, 2476
Psp6I	CCWGG	2 cut(s)	1664, 2478
PspEI	GGTNACC	1 cut(s)	3367
PspFI	CCCAGC	1 cut(s)	2174
PspGI	CCWGG	2 cut(s)	1664, 2478
PspN4I	GGNNCC	7 cut(s)	297, 454, 687, 2145, 2410, 3026, 3227
PspPI	GGNCC	4 cut(s)	685, 2476, 2842, 3024
PspPPI	RGGWCCY	2 cut(s)	685, 2476
PstI	CTGCAG	2 cut(s)	156, 2221
PstNI	CAGNNNCTG	1 cut(s)	1337
PsuI	RGATCY	3 cut(s)	859, 950, 3225
PvuII	CAGCTG	2 cut(s)	2117, 3021
RseI	CAYNNNNRTG	4 cut(s)	501, 1294, 1935, 2965
SacI	GAGCTC	2 cut(s)	1674, 3065
SatI	GCNGC	9 cut(s)	152, 201, 1068, 1647, 1662, 1898, 2530, 2533, 3398
Sau96I	GGNCC	4 cut(s)	685, 2476, 2842, 3024
ScaI	AGTACT	3 cut(s)	509, 925, 1441
SchI	GAGTC	3 cut(s)	770, 1640, 1831
ScrFI	CCNGG	2 cut(s)	1666, 2480
SduI	GDGCHC	7 cut(s)	498, 1515, 1674, 1926, 3065, 3330, 3346
SfaNI	GCATC	5 cut(s)	753, 1509, 2044, 2670, 3490
SfcI	CTRYAG	4 cut(s)	152, 366, 855, 2217
SfoI	GGCGCC	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	3 cut(s)	685, 2476, 3024
SmiMI	CAYNNNNRTG	4 cut(s)	501, 1294, 1935, 2965
SmlI	CTYRAG	1 cut(s)	2468
SmoI	CTYRAG	1 cut(s)	2468
SphI	GCATGC	2 cut(s)	614, 2635
SseBI	AGGCCT	1 cut(s)	2342
SsiI	CCGC	8 cut(s)	200, 326, 990, 1032, 1897, 2533, 2645, 3028
SspDI	GGCGCC	1 cut(s)	295
SspI	AATATT	1 cut(s)	2462
SspMI	CTAG	5 cut(s)	111, 1988, 2993, 3149, 3300
SstI	GAGCTC	2 cut(s)	1674, 3065
StuI	AGGCCT	1 cut(s)	2342
StyD4I	CCNGG	2 cut(s)	1664, 2478
StyI	CCWWGG	7 cut(s)	651, 1305, 1348, 1959, 2304, 2454, 3148
TaaI	ACNGT	6 cut(s)	125, 1272, 1865, 1976, 3416, 3432
TaqI	TCGA	6 cut(s)	72, 182, 412, 1325, 1462, 2943
TaqII	GACCGA	1 cut(s)	51
TatI	WGTACW	7 cut(s)	42, 120, 507, 923, 1191, 1439, 3162
TauI	GCSGC	3 cut(s)	203, 1900, 2535
TfiI	GAWTC	5 cut(s)	436, 1028, 1604, 2285, 3100
TseFI	GTSAC	5 cut(s)	1632, 2110, 3154, 3367, 3446
TseI	GCWGC	6 cut(s)	151, 1067, 1646, 1661, 2529, 3397
Tsp45I	GTSAC	5 cut(s)	1632, 2110, 3154, 3367, 3446
TspGWI	ACGGA	3 cut(s)	279, 1407, 2281
Vha464I	CTTAAG	1 cut(s)	2468
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	3 cut(s)	685, 2476, 3024
VspI	ATTAAT	4 cut(s)	2060, 2096, 2391, 2508
XapI	RAATTY	3 cut(s)	595, 646, 1550
XbaI	TCTAGA	2 cut(s)	1987, 2992
XceI	RCATGY	4 cut(s)	614, 1299, 2635, 2890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1591
XmaJI	CCTAGG	1 cut(s)	3148
XmiI	GTMKAC	2 cut(s)	194, 2863
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	5 cut(s)	111, 1988, 2993, 3149, 3300
ZrmI	AGTACT	3 cut(s)	509, 925, 1441
Zsp2I	ATGCAT	1 cut(s)	2059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.