Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017786

Physical Location & Seq

Genomic Coordinates Forward (+)

85939113 .. 85941334

Gene Structure 2222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCTCGGCACTTTACATGATGGTAGAGAAATTGCTATAAAACGTTTTTTCATAACCGGAAAAACCCAAACTCAAGAGGTGTACAATGAAATTCATATCATTAGCAAAGCTCAACATAAGAAATTGGTTCGCTTCCTTGGCTGTTGCTTCACCAACATCAGCTGCTTCCTTATCTGCGAATTCCTAGCAAACAGAAGCCTCGACCTTATCTTATTTGTGAAGCTTTTGAGTTATAGCATTGAAGGCCCTGAGAGCCTGCTGGTAGGTTATATGGCCCCAGAGTATCTTGTTCAAGGGCAACTAATTATAGAGAAAGCATACGTTTATAGCTTCAGAGTGCTAGTTCTCGAGATTGTGTCTGGTATGAAGAATAGCACCTTCAAACAGGCGGACACTGACTTTGATTCACTGCTACACAAAGTTTGGAAACACTACAGATCAAACGAGTTGGCCGACGTGGTTGATCCTTGCTTGAGAGATCATGAGTTGCCAGCAAAAGAGGTATCAAATGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTGCCTTGAGACCATCTATGGCTGAAGTATTTCTAATGCTAACAGCCAACAAAGAAAGTGACATTCCCATTCCAAACCAACCTCCCTTTCTAAATGCCACGACGCTAGAGCAAGCCAGCTCCATTAGGTCTAATAGCGCAAACAGCTTCGTCTCAAATACTTTAAGAGTGTGTCTGGATAAGGGAAAAAACGGGGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

249

Amino Acids

27.91

Weight (kDa)

6.99

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 70	9e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	8 - 71	1.1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017786)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089311 RchiOBHm_Chr2g0172651
rosa_multiflora	Rmu_ssc0000092.1_g000014
rosa_rugosa	Rorug01G0489000 Rorug02G0246100
rosa_samantha	Rh2AG637000 Rh2BG650400 Rh2CG045100 Rh2CG617000 Rh2DG664500 Rh7DG136400
rosa_wichuraiana	Rw2G052710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	389
AclI	AACGTT	1 cut(s)	43
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	90, 179, 744
AcuI	CTGAAG	2 cut(s)	316, 591
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	242, 293, 382, 518
AjiI	CACGTC	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	6 cut(s)	110, 162, 223, 330, 666, 693
AluI	AGCT	6 cut(s)	110, 162, 223, 330, 666, 693
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	2 cut(s)	550, 703
Alw44I	GTGCAC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	244, 273, 450, 540
ApaLI	GTGCAC	1 cut(s)	532
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	3 cut(s)	90, 179, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	2 cut(s)	245, 274
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	14, 568
BcoDI	GTCTC	2 cut(s)	550, 703
BfaI	CTAG	3 cut(s)	185, 341, 653
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	245, 274
BmiI	GGNNCC	1 cut(s)	276
BpuEI	CTTGAG	3 cut(s)	57, 493, 574
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	240, 558
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	4 cut(s)	246, 275, 452, 542
BsiHKAI	GWGCWC	1 cut(s)	536
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	57
BsmAI	GTCTC	2 cut(s)	550, 703
BsmBI	CGTCTC	1 cut(s)	703
BsnI	GGCC	4 cut(s)	246, 275, 452, 542
Bso31I	GGTCTC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	437, 463, 478
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	4 cut(s)	246, 275, 452, 542
BspCNI	CTCAG	2 cut(s)	241, 557
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	550
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	437, 463, 478
BssT1I	CCWWGG	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	257, 492, 660, 664
BstDEI	CTNAG	2 cut(s)	249, 544
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	3 cut(s)	440, 466, 481
BstMAI	GTCTC	2 cut(s)	550, 703
BstMBI	GATC	3 cut(s)	437, 463, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 243, 252, 548, 690
BstSFI	CTRYAG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	4 cut(s)	246, 275, 452, 542
BtrI	CACGTC	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	393, 407
Cac8I	GCNNGC	4 cut(s)	257, 492, 660, 664
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	686
Cfr13I	GGNCC	2 cut(s)	245, 274
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	17, 482
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	249, 544
DpnI	GATC	3 cut(s)	439, 465, 480
DpnII	GATC	3 cut(s)	437, 463, 478
EaeI	YGGCCR	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	316, 591
Eco88I	CYCGRG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	2 cut(s)	20, 485
FatI	CATG	2 cut(s)	16, 481
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	3 cut(s)	185, 341, 653
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	1 cut(s)	163
HaeIII	GGCC	4 cut(s)	246, 275, 452, 542
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	2 cut(s)	20, 485
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	82, 534
Hpy188I	TCNGA	1 cut(s)	335
Hpy188III	TCNNGA	5 cut(s)	74, 347, 349, 482, 722
Hpy8I	GTNNAC	2 cut(s)	82, 534
Hpy99I	CGWCG	2 cut(s)	458, 652
HpyAV	CCTTC	2 cut(s)	236, 388
HpyCH4IV	ACGT	3 cut(s)	43, 321, 456
HpyCH4V	TGCA	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 243, 252, 548, 690
HpyF3I	CTNAG	2 cut(s)	249, 544
HpySE526I	ACGT	3 cut(s)	43, 321, 456
Hsp92II	CATG	2 cut(s)	20, 485
HspAI	GCGC	1 cut(s)	684
Kzo9I	GATC	3 cut(s)	437, 463, 478
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	3 cut(s)	185, 341, 653
MaeII	ACGT	3 cut(s)	43, 321, 456
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	3 cut(s)	439, 465, 480
MboI	GATC	3 cut(s)	437, 463, 478
MboII	GAAGA	2 cut(s)	379, 506
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	7 cut(s)	30, 90, 122, 179, 303, 519, 744
MnlI	CCTC	5 cut(s)	70, 209, 493, 553, 639
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	2 cut(s)	710, 748
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	138, 243, 252, 548, 690
NdeII	GATC	3 cut(s)	437, 463, 478
NlaIII	CATG	2 cut(s)	20, 485
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	245, 274
PsrI	GAACNNNNNNTAC	2 cut(s)	495, 527
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	710, 748
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	3 cut(s)	437, 463, 478
Sau96I	GGNCC	2 cut(s)	245, 274
SduI	GDGCHC	1 cut(s)	536
SfcI	CTRYAG	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmlI	CTYRAG	4 cut(s)	72, 347, 472, 553
SmoI	CTYRAG	4 cut(s)	72, 347, 472, 553
Sse9I	AATT	7 cut(s)	30, 90, 122, 179, 303, 519, 744
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	3 cut(s)	185, 341, 653
StuI	AGGCCT	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	136
TaiI	ACGT	3 cut(s)	46, 324, 459
TaqI	TCGA	2 cut(s)	201, 348
TasI	AATT	7 cut(s)	30, 90, 122, 179, 303, 519, 744
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	710, 748
Tru9I	TTAA	2 cut(s)	710, 748
TscAI	CASTG	2 cut(s)	400, 414
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	40, 83, 102, 380
TspRI	CASTG	2 cut(s)	400, 414
VneI	GTGCAC	1 cut(s)	532
XapI	RAATTY	3 cut(s)	90, 179, 744
XhoI	CTCGAG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	3 cut(s)	185, 341, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.