Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000092.1

Orthogroup ID

OG0017786

Physical Location & Seq

Genomic Coordinates Reverse (-)

58329 .. 60189

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000092.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggctcctgaatatcttgttcgaggacaactaaccgataaggctgatgtttatgcctttggtgtgcttgttctcgagattgtttataagcactatagggccaatactattactgaatctgttgatgccatgttgaaaggtgagtactccgaaagagaggcgtcgaatgtacttcaaattgggcttctgtgcacgcaagcttctcttgcactgagaccatccatgtctaaggtggtcttggaggttggatccgtgagggcacaccctaaggcttgcgggctctccggggaaggtgggcccatttcatttggtcgtggcagccctcaggaggaggccaaaagtagtggccaagaatccgacggtcgtggaatgccttccgatgaggaagagatggagagtccaaagaggatctccatagtcacaggcgatgacgccgcgtggcaccgccccccgagcgacgggcgggtgactgaagtaatcccgctgcaccaaaagggcgatgacgccgcgtggcaccgccccccgagcgacgggcgggtgactgaagtaatcccgctgcaccaaaagggtagcagcgatgactggaatatgtactccacaccacacagaatgggttgggctcactttgctggcaccttgggagggaacgtgaagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

219

Amino Acids

23.81

Weight (kDa)

5.71

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017786)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089311 RchiOBHm_Chr2g0172651
rosa_multiflora	Rmu_ssc0000092.1_g000014
rosa_rugosa	Rorug01G0489000 Rorug02G0246100
rosa_samantha	Rh2AG637000 Rh2BG650400 Rh2CG045100 Rh2CG617000 Rh2DG664500 Rh7DG136400
rosa_wichuraiana	Rw2G052710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccB1I	GGYRCC	3 cut(s)	441, 513, 632
AccII	CGCG	2 cut(s)	437, 509
AciI	CCGC	9 cut(s)	276, 435, 445, 463, 482, 507, 517, 535, 554
AclWI	GGATC	3 cut(s)	243, 256, 416
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	492, 564
AcyI	GRCGYC	3 cut(s)	161, 432, 504
AfaI	GTAC	3 cut(s)	146, 171, 593
AfiI	CCNNNNNNNGG	4 cut(s)	328, 458, 530, 642
AgsI	TTSAA	2 cut(s)	136, 176
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	243, 256, 416
Ama87I	CYCGRG	3 cut(s)	74, 451, 523
AoxI	GGCC	4 cut(s)	99, 296, 333, 346
ApaI	GGGCCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	318, 484, 556, 573
Asp700I	GAANNNNTTC	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	99, 296, 297
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	152, 478, 550
AvaI	CYCGRG	3 cut(s)	74, 451, 523
AxyI	CCTNAGG	2 cut(s)	267, 324
BaeGI	GKGCMC	3 cut(s)	194, 262, 300
BalI	TGGCCA	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	3 cut(s)	441, 513, 632
BanII	GRGCYC	3 cut(s)	282, 300, 622
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	330, 471, 543, 585
BccI	CCATC	2 cut(s)	226, 385
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	6 cut(s)	319, 435, 485, 507, 557, 574
BlsI	GCNGC	6 cut(s)	320, 436, 486, 508, 558, 575
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	286
BmeT110I	CYCGRG	3 cut(s)	74, 451, 523
BmgT120I	GGNCC	3 cut(s)	99, 296, 297
BmiI	GGNNCC	6 cut(s)	6, 250, 298, 443, 515, 634
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	286
BsaHI	GRCGYC	3 cut(s)	161, 432, 504
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	285, 636
BsaXI	ACNNNNNCTCC	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 458, 530, 642
Bse1I	ACTGG	1 cut(s)	587
Bse21I	CCTNAGG	2 cut(s)	267, 324
BseDI	CCNNGG	2 cut(s)	285, 636
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	4 cut(s)	328, 458, 530, 642
BseMII	CTCAG	2 cut(s)	203, 338
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	3 cut(s)	194, 262, 300
BseXI	GCAGC	4 cut(s)	330, 471, 543, 585
BsgI	GTGCAG	2 cut(s)	470, 542
Bsh1236I	CGCG	2 cut(s)	437, 509
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	101, 298, 335, 348
BshNI	GGYRCC	3 cut(s)	441, 513, 632
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	3 cut(s)	74, 451, 523
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	328, 458, 530, 642
BsmAI	GTCTC	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	4 cut(s)	101, 298, 335, 348
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	3 cut(s)	74, 451, 523
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	5 cut(s)	194, 262, 282, 300, 622
Bsp143I	GATC	2 cut(s)	248, 408
BspACI	CCGC	9 cut(s)	276, 435, 445, 463, 482, 507, 517, 535, 554
BspANI	GGCC	4 cut(s)	101, 298, 335, 348
BspCNI	CTCAG	2 cut(s)	204, 337
BspFNI	CGCG	2 cut(s)	437, 509
BspLI	GGNNCC	6 cut(s)	6, 250, 298, 443, 515, 634
BspPI	GGATC	3 cut(s)	243, 256, 416
BspT107I	GGYRCC	3 cut(s)	441, 513, 632
BspTNI	GGTCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	285, 636
BssMI	GATC	2 cut(s)	248, 408
BssNI	GRCGYC	3 cut(s)	161, 432, 504
BssT1I	CCWWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	3 cut(s)	161, 432, 504
BstC8I	GCNNGC	5 cut(s)	194, 198, 274, 278, 631
BstDEI	CTNAG	4 cut(s)	212, 228, 267, 324
BstF5I	GGATG	1 cut(s)	218
BstFNI	CGCG	2 cut(s)	437, 509
BstKTI	GATC	2 cut(s)	251, 411
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	248, 408
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 453, 525, 626
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	3 cut(s)	194, 262, 300
BstUI	CGCG	2 cut(s)	437, 509
BstV1I	GCAGC	4 cut(s)	330, 471, 543, 585
BstX2I	RGATCY	2 cut(s)	248, 408
BstYI	RGATCY	2 cut(s)	248, 408
Bsu36I	CCTNAGG	2 cut(s)	267, 324
BsuRI	GGCC	4 cut(s)	101, 298, 335, 348
BtgZI	GCGATG	3 cut(s)	441, 513, 591
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	5 cut(s)	194, 198, 274, 278, 631
Cfr13I	GGNCC	3 cut(s)	99, 296, 297
CseI	GACGC	3 cut(s)	150, 440, 512
Csp6I	GTAC	3 cut(s)	145, 170, 592
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	130, 223
CviQI	GTAC	3 cut(s)	145, 170, 592
DdeI	CTNAG	4 cut(s)	212, 228, 267, 324
DpnI	GATC	2 cut(s)	250, 410
DpnII	GATC	2 cut(s)	248, 408
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	636
Eco24I	GRGCYC	3 cut(s)	282, 300, 622
Eco31I	GGTCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	492, 564
Eco81I	CCTNAGG	2 cut(s)	267, 324
Eco88I	CYCGRG	3 cut(s)	74, 451, 523
EcoT14I	CCWWGG	1 cut(s)	636
EcoT38I	GRGCYC	3 cut(s)	282, 300, 622
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	2 cut(s)	133, 226
FaiI	YATR	7 cut(s)	54, 87, 96, 131, 224, 416, 590
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 221, 253
FatI	CATG	2 cut(s)	129, 222
FauI	CCCGC	5 cut(s)	269, 456, 489, 528, 561
Fnu4HI	GCNGC	6 cut(s)	319, 435, 485, 507, 557, 574
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	3 cut(s)	282, 300, 622
Fsp4HI	GCNGC	6 cut(s)	319, 435, 485, 507, 557, 574
GluI	GCNGC	6 cut(s)	319, 435, 485, 507, 557, 574
HaeIII	GGCC	4 cut(s)	101, 298, 335, 348
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	3 cut(s)	150, 440, 512
Hin1I	GRCGYC	3 cut(s)	161, 432, 504
Hin1II	CATG	2 cut(s)	133, 226
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	3 cut(s)	116, 353, 397
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	3 cut(s)	152, 478, 550
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	3 cut(s)	151, 358, 379
Hpy188III	TCNNGA	4 cut(s)	8, 74, 76, 326
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	4 cut(s)	166, 362, 461, 533
HpyAV	CCTTC	2 cut(s)	284, 384
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	4 cut(s)	192, 209, 487, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 453, 525, 626
HpyF3I	CTNAG	4 cut(s)	212, 228, 267, 324
HpySE526I	ACGT	1 cut(s)	648
Hsp92I	GRCGYC	3 cut(s)	161, 432, 504
Hsp92II	CATG	2 cut(s)	133, 226
Kzo9I	GATC	2 cut(s)	248, 408
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	21, 298, 311, 408, 568, 615
Lsp1109I	GCAGC	4 cut(s)	330, 471, 543, 585
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	3 cut(s)	418, 466, 538
MalI	GATC	2 cut(s)	250, 410
MboI	GATC	2 cut(s)	248, 408
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	2 cut(s)	248, 408
MhlI	GDGCHC	5 cut(s)	194, 262, 282, 300, 622
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	2 cut(s)	226, 381
Mox20I	TGGCCA	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	658
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	484, 556
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	375
MvnI	CGCG	2 cut(s)	437, 509
MwoI	GCNNNNNNNGC	4 cut(s)	206, 453, 525, 626
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	248, 408
NlaIII	CATG	2 cut(s)	133, 226
NlaIV	GGNNCC	6 cut(s)	6, 250, 298, 443, 515, 634
NmuCI	GTSAC	3 cut(s)	418, 466, 538
PaeR7I	CTCGAG	1 cut(s)	74
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	116, 353
PkrI	GCNGC	6 cut(s)	320, 436, 486, 508, 558, 575
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	87
PspN4I	GGNNCC	6 cut(s)	6, 250, 298, 443, 515, 634
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	99, 296, 297
PsuI	RGATCY	2 cut(s)	248, 408
RsaI	GTAC	3 cut(s)	146, 171, 593
RsaNI	GTAC	3 cut(s)	145, 170, 592
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	6 cut(s)	319, 435, 485, 507, 557, 574
Sau3AI	GATC	2 cut(s)	248, 408
Sau96I	GGNCC	3 cut(s)	99, 296, 297
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	5 cut(s)	194, 262, 282, 300, 622
SetI	ASST	7 cut(s)	142, 202, 234, 246, 295, 638, 651
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	9 cut(s)	276, 435, 445, 463, 482, 507, 517, 535, 554
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	3 cut(s)	22, 75, 164
TasI	AATT	1 cut(s)	177
TatI	WGTACW	3 cut(s)	144, 169, 591
TauI	GCSGC	2 cut(s)	437, 509
TfiI	GAWTC	2 cut(s)	116, 353
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	3 cut(s)	418, 466, 538
TseI	GCWGC	4 cut(s)	318, 484, 556, 573
Tsp45I	GTSAC	3 cut(s)	418, 466, 538
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	216
VneI	GTGCAC	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	373
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.