Rh7DG136400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017786
Physical Location & Seq
Forward (+)
11586624 .. 11586914
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG136400.1

Sequence Viewer

Length: 291 bp
ATGCCTTCCGATGAGGAAGAGATGGAGAGTCCAAAGAGGATCTCCATAGTCACAGGCGATGACGCCGCGTGGCACAGCCCCCCGAGCGATGGGCGGGTGACTGAAGTAATCCCGCTGCACCAAAAGGGTAGCAGCGATGACTGGGAATATGTACTCCACACCACACAGAATGGGTTGGGCTCACTTTGCTGGCACCTTGGGAGAGAACGTGAAGCATTAATAGGGACCCGCCTCTCCAACCGACTCCACCTTTTGAAGAACGAGAATAAAATAAAATATTGGGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

5.66

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 66, 94, 113, 229
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 256
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 115, 132
AseI ATTAAT 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 102, 144
BccI CCATC 2 cut(s) 16, 83
BisI GCNGC 3 cut(s) 66, 116, 133
BlsI GCNGC 3 cut(s) 67, 117, 134
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 3 cut(s) 194, 226, 227
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 102, 144
BsgI GTGCAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 4 cut(s) 66, 94, 113, 229
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 194, 226, 227
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 191
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 84, 186
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 102, 144
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BtgZI GCGATG 3 cut(s) 72, 102, 150
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 152
CviJI RGCY 3 cut(s) 78, 180, 284
CviKI_1 RGCY 3 cut(s) 78, 180, 284
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 196
FaiI YATR 2 cut(s) 47, 150
FaqI GGGAC 1 cut(s) 238
FauI CCCGC 3 cut(s) 87, 120, 236
Fnu4HI GCNGC 3 cut(s) 66, 116, 133
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 66, 116, 133
GluI GCNGC 3 cut(s) 66, 116, 133
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
HinfI GANTC 2 cut(s) 28, 243
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 186
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 3 cut(s) 39, 127, 175
Lsp1109I GCAGC 2 cut(s) 102, 144
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 49, 97
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 29, 268
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 2 cut(s) 37, 237
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 3 cut(s) 7, 30, 242
MseI TTAA 2 cut(s) 218, 289
MspA1I CMGCKG 1 cut(s) 115
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 84, 186
NdeII GATC 1 cut(s) 39
NlaIV GGNNCC 3 cut(s) 194, 226, 227
NmuCI GTSAC 2 cut(s) 49, 97
PkrI GCNGC 3 cut(s) 67, 117, 134
PleI GAGTC 2 cut(s) 36, 237
PpsI GAGTC 2 cut(s) 36, 237
PpuMI RGGWCCY 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 194, 226, 227
PspPI GGNCC 1 cut(s) 225
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 218, 289
SatI GCNGC 3 cut(s) 66, 116, 133
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 2 cut(s) 37, 237
SduI GDGCHC 1 cut(s) 182
SetI ASST 3 cut(s) 198, 211, 252
SinI GGWCC 1 cut(s) 225
SsiI CCGC 4 cut(s) 66, 94, 113, 229
SspI AATATT 1 cut(s) 278
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 1 cut(s) 211
TatI WGTACW 1 cut(s) 151
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 218, 289
Tru9I TTAA 2 cut(s) 218, 289
TseFI GTSAC 2 cut(s) 49, 97
TseI GCWGC 2 cut(s) 115, 132
Tsp45I GTSAC 2 cut(s) 49, 97
VpaK11BI GGWCC 1 cut(s) 225
VspI ATTAAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.