Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017786

Physical Location & Seq

Genomic Coordinates Forward (+)

86172786 .. 86173292

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG637000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCAACTCTTGGACATAGCAAATGACTGCTGTTTTACATTTTGGGATATAAGTAACAAGAGCTTATTAGACCATCTTACGTTTGCGTTTCAGGTTTGGAAACACTACAGATCAAACGAGTTGGCCGACGTGGTTGATCCTTGCTTGAGAGATCATGAGTTGCCAGCAAAAGAGGTATCAAATGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTGCTTTGAGACCATCTATGGCTAAAGTAGTTCTAATGCTAACAGCCAACAAAGAAAGTGACATTCCTGTTCCAAACCAACCTCCCTTTCTAAATGCCACGACGCTAGAGCAAGCCAGCTCCATTAGGTCTAATAGCGCAAACAGCTTCGTCTCAAATACTTTAACGAAAGTTGAGACGTCCTACACCTCATCAGAGTCTTCCACCATGCCTAGTTTGGATAATATGGGACATATATCAACAAAAAGAGTAAGCTCTTGCAGAAGTAGCAAGTTTCCCACGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

168

Amino Acids

18.56

Weight (kDa)

6.05

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017786)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0089311 RchiOBHm_Chr2g0172651
rosa_multiflora	Rmu_ssc0000092.1_g000014
rosa_rugosa	Rorug01G0489000 Rorug02G0246100
rosa_samantha	Rh2AG637000 Rh2BG650400 Rh2CG045100 Rh2CG617000 Rh2DG664500 Rh7DG136400
rosa_wichuraiana	Rw2G052710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	191
AjiI	CACGTC	2 cut(s)	130, 501
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	63, 339, 366, 474
AluI	AGCT	4 cut(s)	63, 339, 366, 474
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	3 cut(s)	223, 376, 389
Alw44I	GTGCAC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	123, 213
ApaLI	GTGCAC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	209
BccI	CCATC	2 cut(s)	81, 241
BcoDI	GTCTC	3 cut(s)	223, 376, 389
BfaI	CTAG	2 cut(s)	326, 432
BfmI	CTRYAG	1 cut(s)	106
BmgBI	CACGTC	2 cut(s)	130, 501
BpiI	GAAGAC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	125, 215
BsiHKAI	GWGCWC	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	462
BsmAI	GTCTC	3 cut(s)	223, 376, 389
BsmBI	CGTCTC	2 cut(s)	376, 389
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	125, 215
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	110, 136, 151
BspANI	GGCC	2 cut(s)	125, 215
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	154
BspPI	GGATC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	223
BssMI	GATC	3 cut(s)	110, 136, 151
BssNI	GRCGYC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	165, 333, 337
BstDEI	CTNAG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	113, 139, 154
BstMAI	GTCTC	3 cut(s)	223, 376, 389
BstMBI	GATC	3 cut(s)	110, 136, 151
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 363, 486
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	125, 215
BtrI	CACGTC	2 cut(s)	130, 501
Cac8I	GCNNGC	3 cut(s)	165, 333, 337
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	359
CseI	GACGC	1 cut(s)	331
CviAII	CATG	2 cut(s)	155, 427
CviJI	RGCY	9 cut(s)	63, 125, 215, 242, 266, 335, 339, 366, 474
CviKI_1	RGCY	9 cut(s)	63, 125, 215, 242, 266, 335, 339, 366, 474
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	3 cut(s)	112, 138, 153
DpnII	GATC	3 cut(s)	110, 136, 151
EaeI	YGGCCR	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	223
Esp3I	CGTCTC	2 cut(s)	376, 389
FaeI	CATG	2 cut(s)	158, 430
FaiI	YATR	8 cut(s)	17, 50, 156, 239, 428, 446, 453, 455
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	2 cut(s)	154, 426
FspBI	CTAG	2 cut(s)	326, 432
GlaI	GCGC	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	125, 215
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	158, 430
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	2 cut(s)	131, 325
HpyCH4IV	ACGT	4 cut(s)	80, 129, 398, 500
HpyCH4V	TGCA	3 cut(s)	4, 207, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 363, 486
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	4 cut(s)	80, 129, 398, 500
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	158, 430
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	110, 136, 151
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	77, 177, 197, 300, 349
MaeI	CTAG	2 cut(s)	326, 432
MaeII	ACGT	4 cut(s)	80, 129, 398, 500
MaeIII	GTNAC	2 cut(s)	53, 278
MalI	GATC	3 cut(s)	112, 138, 153
MboI	GATC	3 cut(s)	110, 136, 151
MboII	GAAGA	2 cut(s)	179, 411
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	4 cut(s)	166, 226, 312, 418
MseI	TTAA	2 cut(s)	383, 505
MwoI	GCNNNNNNNGC	3 cut(s)	221, 363, 486
NdeII	GATC	3 cut(s)	110, 136, 151
NlaIII	CATG	2 cut(s)	158, 430
NmuCI	GTSAC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PsrI	GAACNNNNNNTAC	2 cut(s)	168, 200
SaqAI	TTAA	2 cut(s)	383, 505
Sau3AI	GATC	3 cut(s)	110, 136, 151
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	215
SspMI	CTAG	2 cut(s)	326, 432
StuI	AGGCCT	1 cut(s)	215
TaiI	ACGT	4 cut(s)	83, 132, 401, 503
TasI	AATT	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	383, 505
Tru9I	TTAA	2 cut(s)	383, 505
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	2 cut(s)	326, 432
ZraI	GACGTC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.