Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002006

Physical Location & Seq

Genomic Coordinates Forward (+)

57432580 .. 57436291

Gene Structure 3712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0489000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCCAAGTGCTTAGTGGTGCCCCATTCCCATTCCTATTCCTATTGCTGCTATAGGAGGAACTCTAGCAGCACCAGGAACAGGAAGGCACCTCCGCAACAACATCAGCTCAATTCCTTGGCCGCCGGAGCCGGCACTCTCTTCTCCGTCACCACCTCTTCAAACTCTTACAGTACTCCCCTCAATTTGCAACGCCGCCGAATTCTCAGCGCTCTCGAGTCCGATGTTCCTCACCCTCTTCACCAGGGATCGGCGAAATTGAAGAGTAGTGAGAGTTTTGAGCAATGGGATTCATGGACAGCAAAGTTCTCTGGCGCATCCAATATTCCATTTCTGCTGCTGCAAATGCCTCAGATCATCCTGAATGCTCAAAATCTTATGGCTGGAAATAAAGCTGCTCTTTTGGCAGTCCCTTGGCTGGGAATGTTTACTGGTTTGCTTGGAAACCTTTCGCTGCTTTCATATTTTGCAAAGAAGAGGGAGAAAGAGGCGATTGTGGTGCAAACATTGGGTGTAGTTTCCTTGTATACTGTATTTGCACAGCTCTCCTTGGCAGAAGCAATGCCTCTACCATACTTTGTGATTACCTCCATCGTCGTGGCAACTGGTCTTATTTTGAATTTTTTGAATTACTTTAACTTCCTCAATCCTGGAGTCTGGCTCTTCTGGGAAGATTTTATTACTGTTGGTGGGCTGTCAGTTCTTCCCCAGATTATGTGGTCTACATTTGTTCCATATATACCCAGCAGTATCGTGCCTGGAGCATTGGCTTTTGTTTTAGCTGTGGCAGCTGTAATTATGGCTCGAATGGGGAAACTCTCTTCAGAAGGAACCAAATTTGTTAGATCAATATCTGGATGGACAGCTACACTCCTCTTCATGTGGATGCCTGTTTCCCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGCTTATCAGCTGTCTCAATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCTCGTGCTCTTTTTATTCGTGATTTTATGTGGTTCACAGGTTCTTCATGGGCTTCTTTCTTTTATGGATATGGGAACATTGTGGCCTTATATTGGTTTAACAGTATCAGCAAGGAATTCTTCTTAGCAGCGACAGCTGGTTTGTTTTTATGGATAGGAATGGCTCTTTGGAGAGATGCTGTGGTGTATGGTTACAGCTCCCCTCTCACATCTTTAAAAGAGCTGGTTTCTGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

409

Amino Acids

45.22

Weight (kDa)

9.57

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730 AT3G27730
fragaria_vesca	FvH4_6g51100
malus_domestica	MD09G1029000.v1.1 MD09G1029100.v1.1
prunus_persica	Prupe.3G288900_v2.0.a1
pyrus_communis	pycom111g02300 pycom111g02310
rosa_chinensis	RchiOBHm_Chr2g0089321 RchiOBHm_Chr2g0172661 RchiOBHm_Chr2g0172671
rosa_laevigata	RLG00000022075 RLG00000022122 RLG00000022126
rosa_multiflora	Rmu_sc0002053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079680 Rroxscaffold_2G00080200 Rroxscaffold_2G00080420
rosa_rugosa	Rorug01G0489000 Rorug01G0489100 Rorug02G0246000 Rorug02G0560500.1
rosa_samantha	Rh2AG637300 Rh2AG637400 Rh2AG637500 Rh2AG637900 Rh2BG650700 Rh2BG650800 Rh2BG650900 Rh2BG651500 Rh2CG045200 Rh2CG045300 Rh2CG610500 Rh2CG617200 Rh2CG617600 Rh2DG658400 Rh2DG664700 Rh2DG665400
rosa_wichuraiana	Rw2G052240 Rw2G052720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 88
AccI	GTMKAC	2 cut(s)	527, 722
AciI	CCGC	3 cut(s)	95, 123, 196
AclWI	GGATC	3 cut(s)	256, 982, 1218
AcoI	YGGCCR	2 cut(s)	3, 120
AcsI	RAATTY	5 cut(s)	201, 619, 836, 910, 1106
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	6 cut(s)	81, 250, 418, 419, 903, 1083
AgsI	TTSAA	4 cut(s)	162, 262, 619, 628
AjnI	CCWGG	4 cut(s)	74, 243, 649, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	1141, 1173
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	1 cut(s)	955
AlwI	GGATC	3 cut(s)	256, 982, 1218
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	3 cut(s)	3, 120, 1074
ApeKI	GCWGC	8 cut(s)	48, 69, 337, 340, 395, 454, 788, 1118
ApoI	RAATTY	5 cut(s)	201, 619, 836, 910, 1106
ArsI	GACNNNNNNTTYG	2 cut(s)	1114, 1146
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	212, 317
AsuHPI	GGTGA	3 cut(s)	142, 224, 233
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1223
BanI	GGYRCC	2 cut(s)	19, 88
BauI	CACGAG	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	8 cut(s)	35, 81, 324, 327, 382, 441, 800, 1130
BccI	CCATC	2 cut(s)	599, 852
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	4 cut(s)	76, 245, 651, 759
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	4 cut(s)	76, 245, 651, 759
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	5 cut(s)	21, 90, 130, 832, 1225
BmrFI	CCNGG	4 cut(s)	76, 245, 651, 759
BmsI	GCATC	3 cut(s)	326, 876, 1156
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpmI	CTGGAG	2 cut(s)	672, 780
BsaBI	GATNNNNATC	1 cut(s)	850
BsaJI	CCNNGG	4 cut(s)	117, 244, 413, 549
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 250, 418, 419, 903, 1083
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	436, 610
Bse3DI	GCAATG	3 cut(s)	290, 567, 972
Bse8I	GATNNNNATC	1 cut(s)	850
BseBI	CCWGG	4 cut(s)	76, 245, 651, 759
BseDI	CCNNGG	4 cut(s)	117, 244, 413, 549
BseGI	GGATG	4 cut(s)	317, 357, 863, 891
BseJI	GATNNNNATC	1 cut(s)	850
BseLI	CCNNNNNNNGG	6 cut(s)	81, 250, 418, 419, 903, 1083
BseMI	GCAATG	3 cut(s)	290, 567, 972
BseMII	CTCAG	2 cut(s)	220, 365
BseNI	ACTGG	2 cut(s)	436, 610
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	8 cut(s)	35, 81, 324, 327, 382, 441, 800, 1130
BseYI	CCCAGC	2 cut(s)	418, 743
BshFI	GGCC	3 cut(s)	5, 122, 1076
BshNI	GGYRCC	2 cut(s)	19, 88
BsiHKAI	GWGCWC	1 cut(s)	1000
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	126, 132
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	6 cut(s)	81, 250, 418, 419, 903, 1083
BsmAI	GTCTC	1 cut(s)	955
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	5, 122, 1076
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	24, 1000
Bsp143I	GATC	5 cut(s)	248, 354, 845, 987, 1223
BspACI	CCGC	3 cut(s)	95, 123, 196
BspANI	GGCC	3 cut(s)	5, 122, 1076
BspCNI	CTCAG	2 cut(s)	219, 364
BspLI	GGNNCC	5 cut(s)	21, 90, 130, 832, 1225
BspPI	GGATC	3 cut(s)	256, 982, 1218
BspQI	GCTCTTC	1 cut(s)	668
BspT107I	GGYRCC	2 cut(s)	19, 88
BsrDI	GCAATG	3 cut(s)	290, 567, 972
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	436, 610
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	117, 244, 413, 549
BssMI	GATC	5 cut(s)	248, 354, 845, 987, 1223
BssNAI	GTATAC	1 cut(s)	528
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	3 cut(s)	117, 413, 549
Bst1107I	GTATAC	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	4 cut(s)	76, 245, 651, 759
Bst4CI	ACNGT	4 cut(s)	173, 532, 685, 1094
Bst6I	CTCTTC	8 cut(s)	146, 163, 243, 257, 470, 668, 826, 881
BstC8I	GCNNGC	2 cut(s)	133, 963
BstDEI	CTNAG	4 cut(s)	13, 206, 351, 1114
BstF5I	GGATG	4 cut(s)	317, 357, 863, 891
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 317
BstKTI	GATC	5 cut(s)	251, 357, 848, 990, 1226
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	5 cut(s)	248, 354, 845, 987, 1223
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 346, 404, 788, 1124
BstNI	CCWGG	4 cut(s)	76, 245, 651, 759
BstSCI	CCNGG	4 cut(s)	74, 243, 649, 757
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	8 cut(s)	35, 81, 324, 327, 382, 441, 800, 1130
BstX2I	RGATCY	1 cut(s)	1223
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	1223
BstZ17I	GTATAC	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	5, 122, 1076
BtsCI	GGATG	4 cut(s)	317, 357, 863, 891
Cac8I	GCNNGC	2 cut(s)	133, 963
CfoI	GCGC	2 cut(s)	212, 317
Cfr10I	RCCGGY	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	294, 880, 1038
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	13, 206, 351, 1114
DpnI	GATC	5 cut(s)	250, 356, 847, 989, 1225
DpnII	GATC	5 cut(s)	248, 354, 845, 987, 1223
DraI	TTTAAA	1 cut(s)	1206
EaeI	YGGCCR	2 cut(s)	3, 120
Eam1104I	CTCTTC	8 cut(s)	146, 163, 243, 257, 470, 668, 826, 881
EarI	CTCTTC	8 cut(s)	146, 163, 243, 257, 470, 668, 826, 881
Eco130I	CCWWGG	3 cut(s)	117, 413, 549
Eco47III	AGCGCT	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	215
EcoRI	GAATTC	2 cut(s)	201, 1106
EcoRII	CCWGG	4 cut(s)	74, 243, 649, 757
EcoT14I	CCWWGG	3 cut(s)	117, 413, 549
ErhI	CCWWGG	3 cut(s)	117, 413, 549
FaeI	CATG	3 cut(s)	297, 883, 1041
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 1094, 1126
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	293, 879, 1037
FblI	GTMKAC	2 cut(s)	527, 722
FokI	GGATG	4 cut(s)	304, 344, 870, 898
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	211, 316
GsaI	CCCAGC	2 cut(s)	422, 747
GsuI	CTGGAG	2 cut(s)	672, 780
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	5, 122, 1076
HapII	CCGG	2 cut(s)	126, 132
HhaI	GCGC	2 cut(s)	212, 317
Hin1II	CATG	3 cut(s)	297, 883, 1041
Hin6I	GCGC	2 cut(s)	210, 315
HinP1I	GCGC	2 cut(s)	210, 315
HinfI	GANTC	3 cut(s)	218, 290, 654
HpaII	CCGG	2 cut(s)	126, 132
HphI	GGTGA	3 cut(s)	142, 224, 233
Hpy166II	GTNNAC	5 cut(s)	429, 528, 723, 906, 1026
Hpy188I	TCNGA	3 cut(s)	223, 354, 826
Hpy188III	TCNNGA	6 cut(s)	215, 361, 855, 923, 1010, 1221
Hpy8I	GTNNAC	5 cut(s)	429, 528, 723, 906, 1026
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	2 cut(s)	79, 821
HpyCH4III	ACNGT	4 cut(s)	173, 532, 685, 1094
HpyCH4V	TGCA	6 cut(s)	190, 343, 470, 502, 539, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 346, 404, 788, 1124
HpyF3I	CTNAG	4 cut(s)	13, 206, 351, 1114
Hsp92II	CATG	3 cut(s)	297, 883, 1041
HspAI	GCGC	2 cut(s)	210, 315
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	248, 354, 845, 987, 1223
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	3 cut(s)	128, 761, 1193
Lsp1109I	GCAGC	8 cut(s)	35, 81, 324, 327, 382, 441, 800, 1130
LweI	GCATC	3 cut(s)	326, 876, 1156
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	148, 1181
MalI	GATC	5 cut(s)	250, 356, 847, 989, 1225
MboI	GATC	5 cut(s)	248, 354, 845, 987, 1223
MflI	RGATCY	1 cut(s)	1223
MhlI	GDGCHC	2 cut(s)	24, 1000
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	227, 663
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	636, 1089, 1205
MslI	CAYNNNNRTG	2 cut(s)	596, 884
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	791, 947, 1127
MspI	CCGG	2 cut(s)	126, 132
MspR9I	CCNGG	4 cut(s)	76, 245, 651, 759
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	4 cut(s)	76, 245, 651, 759
MwoI	GCNNNNNNNGC	5 cut(s)	128, 346, 404, 788, 1124
NaeI	GCCGGC	1 cut(s)	133
NdeII	GATC	5 cut(s)	248, 354, 845, 987, 1223
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	297, 883, 1041
NlaIV	GGNNCC	5 cut(s)	21, 90, 130, 832, 1225
NmuCI	GTSAC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	668
PctI	GAATGC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	649
PleI	GAGTC	2 cut(s)	226, 662
PpsI	GAGTC	2 cut(s)	226, 662
Psp6I	CCWGG	4 cut(s)	74, 243, 649, 757
PspFI	CCCAGC	2 cut(s)	418, 743
PspGI	CCWGG	4 cut(s)	74, 243, 649, 757
PspN4I	GGNNCC	5 cut(s)	21, 90, 130, 832, 1225
PsuI	RGATCY	1 cut(s)	1223
PvuII	CAGCTG	3 cut(s)	791, 947, 1127
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	2 cut(s)	596, 884
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	636, 1089, 1205
Sau3AI	GATC	5 cut(s)	248, 354, 845, 987, 1223
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	227, 663
ScrFI	CCNGG	4 cut(s)	76, 245, 651, 759
SduI	GDGCHC	2 cut(s)	24, 1000
SfaNI	GCATC	3 cut(s)	326, 876, 1156
SfcI	CTRYAG	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	596, 884
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	3 cut(s)	95, 123, 196
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	74, 243, 649, 757
StyI	CCWWGG	3 cut(s)	117, 413, 549
TaaI	ACNGT	4 cut(s)	173, 532, 685, 1094
TaqI	TCGA	2 cut(s)	216, 805
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	2 cut(s)	125, 198
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	636, 1089, 1205
Tru9I	TTAA	3 cut(s)	636, 1089, 1205
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	8 cut(s)	48, 69, 337, 340, 395, 454, 788, 1118
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	282, 450, 868, 1026
TspGWI	ACGGA	1 cut(s)	136
XapI	RAATTY	5 cut(s)	201, 619, 836, 910, 1106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	527, 722
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.